Sper009420.1
Basic Information
- Insect
- Sinelater perroti
- Gene Symbol
- -
- Assembly
- GCA_036346155.1
- Location
- JARFIY010000020.1:124384-125545[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 3.1e-06 0.00088 21.8 0.7 3 23 35 55 33 55 0.97 2 11 0.013 3.9 10.4 0.0 2 23 76 97 75 97 0.96 3 11 0.26 73 6.3 1.7 1 23 101 123 101 123 0.87 4 11 0.027 7.8 9.4 3.9 1 23 129 152 129 152 0.96 5 11 0.0037 1.1 12.1 1.9 1 19 158 176 158 180 0.90 6 11 0.0015 0.42 13.4 0.3 1 23 186 209 186 209 0.95 7 11 7.1e-07 0.0002 23.8 4.8 2 23 221 242 220 242 0.98 8 11 1.6e-06 0.00045 22.8 0.7 3 23 256 276 254 276 0.96 9 11 1.7e-05 0.0049 19.5 3.0 1 23 282 304 282 304 0.98 10 11 3.5e-06 0.001 21.6 2.0 1 23 310 332 310 332 0.98 11 11 0.056 16 8.4 0.2 1 19 338 356 338 359 0.88
Sequence Information
- Coding Sequence
- ATGAAAATTAACGAAGACAGGAGCTCGCCCCTGGGCGTGAAAAGCGAGCCGAACGACGCCGTGTCGTTCGTGCAGGTGCAAGGCAGCCCCCATGCATGGGCGTGCAAAAAGTGCCCCGAAGTATTCGATACGTCCACGCTGCTGCGGAGGCACCGGAAGACCCACCGGAAGCAGGAGTCGTACTTCCAGTACAGTTACCGCTTCGACGAGAAGCGCGGGGTGCTCGTCTGCAAGACCTGCGACCTAGAGCTGGCCGACAGGGACGAGATGGAGAAGCACGTGATTGTGCACGAGGACAAGTTTGCATGCGACATTTGCAAGCAGGAGTTCGTTAAGCCATACGAGTACAGCTGCCATGTTTATAGCCACGACCAAACCAAGGACTTTTGTTGCCCCCTTTGTAAATTCACCACCTCGAACCGAACCACTATATTAAAGCACATCAATTCTTTTCACTTGGGGAGATACATCTACACTTGCGCGAAGTGTGGGAAGGGCTTCAACAACTGCGTGCTTTACAAAGAACACGACAACGTCCATGAGGGCATCAAGCCGTTCCGGTGCGTTGTGTGCAGTAGAGAGTACGCGTTTTCCAGTTACCTCGCTGCCCACCAAGTCCGTTACCACAGAGTTAGCATAGATGGAGTTCTCGGACCGAATCAGTGCTCGGTTTGCCACAAAAGGTTTAGCAGGAACAGCACCTTGGAAACCCACATGAAGAGACATGAGAGGAGGAAGAACATGGCACGCGAGAAGAAGCACCTCTGTGACGTGTGCGGAAAGGGCTTCGCAACTAAGGAGAAGTTGACGGCGCATTACCGGGTTCATACCGGTGATAAACCATATGCGTGCTCTCACTGCCCCAAGAGTTTCACCCTCAAGCAGTATCTTACTTTACACAAGCGAGTACACAGTGGGGAAAAGCCCTATTCCTGTGAACACTGCGGGAAGTGCTTCAGTCAGGGGGCTCCACTGAAGATCCACGTGCGGATGCACACTGGAGAAAAGCCCTACGTCTGCCACATCTGCAAGGCGGGCTTTGTGTCCAAAGGCATTCTTAATTTGCACTTCCAGAACTGCCCCGGCATCTGTACCTAA
- Protein Sequence
- MKINEDRSSPLGVKSEPNDAVSFVQVQGSPHAWACKKCPEVFDTSTLLRRHRKTHRKQESYFQYSYRFDEKRGVLVCKTCDLELADRDEMEKHVIVHEDKFACDICKQEFVKPYEYSCHVYSHDQTKDFCCPLCKFTTSNRTTILKHINSFHLGRYIYTCAKCGKGFNNCVLYKEHDNVHEGIKPFRCVVCSREYAFSSYLAAHQVRYHRVSIDGVLGPNQCSVCHKRFSRNSTLETHMKRHERRKNMAREKKHLCDVCGKGFATKEKLTAHYRVHTGDKPYACSHCPKSFTLKQYLTLHKRVHSGEKPYSCEHCGKCFSQGAPLKIHVRMHTGEKPYVCHICKAGFVSKGILNLHFQNCPGICT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -