Sper027589.1
Basic Information
- Insect
- Sinelater perroti
- Gene Symbol
- Zfpm1
- Assembly
- GCA_036346155.1
- Location
- JARFIY010000110.1:4144720-4153781[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 6 1.7e+03 2.0 0.0 3 23 8 28 7 28 0.91 2 14 0.04 11 8.9 1.2 1 23 523 546 523 546 0.89 3 14 0.00029 0.082 15.6 2.4 2 23 646 668 645 668 0.92 4 14 0.007 2 11.3 0.5 1 23 676 698 676 698 0.98 5 14 4.5e-05 0.013 18.2 2.1 2 23 701 722 700 722 0.96 6 14 0.22 62 6.6 1.2 3 23 730 750 728 750 0.96 7 14 2.2e-05 0.0064 19.1 5.3 2 23 757 778 756 779 0.95 8 14 0.00018 0.05 16.3 1.5 3 23 817 838 816 838 0.97 9 14 0.043 12 8.8 0.0 2 23 854 874 853 874 0.96 10 14 0.00041 0.12 15.1 0.9 1 20 880 899 880 902 0.91 11 14 9.1e-05 0.026 17.2 0.2 1 23 910 932 910 932 0.99 12 14 0.0017 0.49 13.2 4.4 1 23 938 960 938 960 0.97 13 14 6.9e-07 0.0002 23.9 3.5 1 23 966 988 966 988 0.98 14 14 0.0013 0.39 13.5 5.8 1 23 994 1016 994 1017 0.95
Sequence Information
- Coding Sequence
- ATGGATTCTGAAAACTCTATCTGTCCTGTGTGCACTCTGTATCTTAGGCCTGGCATCACACTGAAGGCTCACCTGTCCAGCCATCCAAAGCAGAAGGTAATCGACGCGCTAGTCAATCTCACCACTACCCGAAATGAAGTCAAGGAAGTCGCTGTGCCTAGCCCTCCTCCAACAGAGATTGGTTCAAGTTCACAGACAAGCACGCAAAACTGGACGCAGCCCGTAGCGGGCCTTCCACCGATGCAAGGCAACCATTCCTTCATCTATCAGCAGTTTATGAGTACAACAAGCCAGCCAACTCCAAATGTAGTCAATGTCAATCCGCTAAATCAGCAGTACATTACAATTCCCACGGTCTTTAATCCGCAAATGATGTGCCAGCCCTATTTATACCACCAGCAGCAGCAAGTGATAATGTCTGCTGGAACGTCCGTACCTCTCATACGTAAATCTCCGTTAATTGATTTGTGCAGTGAATCGGAATCTAACATTCAAGAGCAAGATGTGGTAACAGTTGACGATGCAATAGAACCAGACGATAGTGCTGTGGGATCACCAAAGCAAGCATCTAAGAAGGATGAAGATGAAGTTACATTAGAGGACCAAGCGGTATCTATCGAGTTGAGAGAAACAGAGGCAGCCCAACATGATGGCTTGAACATGCAGTGCCAAGAAGAGGTTAAAGATTGtgaaaaatttgagaataaatatgaaaagaagGAGGAGGGCAAAGAGGAGGAATTTGAAGTACATGAGGAACAGCTCGAAGAGTTTCAAGGACCCGAAGATAATCTCGGATCCCCCGCATCTAGCGTGGGCTCAGATTATCTTCGTGTCAGAACCGATTTAAATAAAGCATGCCAAACCCAGCAAGCAGTGCAGCACAATGCTGGGGAGGAACTCCATATTGGGCCCGAGAATAACCAGGAAGTCTACTTTAGTTCGGGGGACCAGGAATCGGCTGCAGTACCTACGGAAATGATGCATCTGCATTCTGGTGCTTTTGAGACAAACGAAATGAATTATCCACCTAACAGCATGAATACAGTGCAGCCAAATGATCAAGTGATAGACATGGATGGCATGCAGCTGGTGCTTTGTAATGACTTCATGGGCAGCCAGCTGATATCTCAGGTTGACGATTTTGAATGCATTAATAATCGCACTGAACGAACTGTTTTGATGAACATAGGAGGCATGGACGGTGGATTTGCAGCTAACTCATTTCACGATTCCAATGTGGAGCAACTAGGCGAGGAGAGCGTTTCGCATGAAAGCACCAACATGAGCATCCGAGCCGATGAGCACATGCCACCTCGGGGAGAATTATCAGGACAGGAAAGCAATGGGGCAGCTAGTGATATAGCGTGGAGCAGAATGCAGTACGAAGGGAATTCTGCTACATCTACATCCTACGACCTGTTGGCTCGTGAAACGTGGGAGGGTTCCGATTGTTCAGATTCCGAAGTGCCGCCTTTGCAAAGCCGGATTCCTCCCCACATACTTTACAACCCCGACGTGGACGACACACCCACGATCGTGAGCGTGACAGAGCCTCCGCTCAACTTTAAATGCCCTGTGTGCGGGCAGGGATTCAAGTGCCCCAAGGAGCGTAGGGTGCATCAGACAGAAGTGCACAGTAACAAACCACAGACAGACAATAACAAAAGCGACAGTAGTGAAAAGGTATCTGGTACTACTAACACTGTAATCGGTTCTAAGCTAAATAAGAAGCCAGTTAAGAAGTTGGTGATTAAGCCGAAGAAGACTGAAATTAAGAGCGAGAATAACTTCGATAACGTTTTTACTAATCAATTTAAGTTAGACACCTCAGCGGCTGAAGAGCCGCAGCCGACGGAGGAAGCAAGAGCTTCTGTTATAGCTGCTGTGGGTGCAGATTGTGATGTAGATGATAAAAAGGATGTCAAGTATTGTGTTTGCCATATCTGCGACGTGGTGTTTCCGGACAGTAAATCGCTAAGGAAGCACAAGTTGCAGTTGCATAGTAAGgggtatggaaataaacataagtGCGACACATGCGGAGAGGTGTTGGCAAACGAACTGCAATACAATGAGCATTTGAGGCAGCATCCCTTGGAGTGTCGATTCTGTGGGAAGTACTTTTACAGGCGCCAAAACCTGCAGCTGCACATAAAGCGACACTTGGGCATAAAACCATATGGATGTGAGTTTTGCCAGAAGTCATttttaaccaaacaaaaattagatgaacATAAGAATATTCATACCGGGGAAACGCCGATTAAATGTAATATGTGTGATGAAACTTTTCGCAGGCACTCGAACCTAGTGCAGCACCGAAATCGCCACCACCTAAACATCAAGAGGAAAGTGAAAGACTACATTTGTTTTTGTGGAGAGATTTTGCACTCGAAGAAGAAGCTGGCATGGCATAAGGAGATCCATGACTCAAAGCCCAAGGCGTGTTCCCAGTGCAGCGAGAAGTTTGTGCACATGGCTAGTCTGACCAGGCATATGCGTCGGGCGCACAACGAGCGGTTCGTGCCTGTTGAGGAGCGCAGCAACGAGAACGTCGAGTGCCCCATCTGCAAGGGCGTGTACTTGCGGTCGTCGCTGGAGGTGCACATCCGCAACCACAGCGGGCACAGGCCATTCGCTTGCTTGATCTGCAACAAAGATTTCACCACCAAGTGGAACTTGAAGTTGCACAAGTGGACGCACGCAGCGAGGGCGTCGAAGCCGTACAAGTGCGACCAATGCAAAGGAGCCTTTATCAGGGAGTCAGACTACATTGCACACATGAACTCCCACAAGAGCGTTCGGCCCTACATTTGCAACCACTGCGGTGCCCAGTTCATACGCAAGTATAATTGCCAAAGGCACGTGAGAGAGCACGAGAAAGCCAAGACGTTTTCATGTCAGGTTTGCGGTAAGAGCTTTCACAGGTCGTATTACCTCAAGGATCACATGCGAGTGCATAGCGGCTTGCGACCATATGCTTGCCATATCTGTGGGAAAACATCCACAACCAAATCTAACCACAACAAGCATGTCATGATACATCATGCTAAAGAACCTGTCAGCACTGAAAATTGA
- Protein Sequence
- MDSENSICPVCTLYLRPGITLKAHLSSHPKQKVIDALVNLTTTRNEVKEVAVPSPPPTEIGSSSQTSTQNWTQPVAGLPPMQGNHSFIYQQFMSTTSQPTPNVVNVNPLNQQYITIPTVFNPQMMCQPYLYHQQQQVIMSAGTSVPLIRKSPLIDLCSESESNIQEQDVVTVDDAIEPDDSAVGSPKQASKKDEDEVTLEDQAVSIELRETEAAQHDGLNMQCQEEVKDCEKFENKYEKKEEGKEEEFEVHEEQLEEFQGPEDNLGSPASSVGSDYLRVRTDLNKACQTQQAVQHNAGEELHIGPENNQEVYFSSGDQESAAVPTEMMHLHSGAFETNEMNYPPNSMNTVQPNDQVIDMDGMQLVLCNDFMGSQLISQVDDFECINNRTERTVLMNIGGMDGGFAANSFHDSNVEQLGEESVSHESTNMSIRADEHMPPRGELSGQESNGAASDIAWSRMQYEGNSATSTSYDLLARETWEGSDCSDSEVPPLQSRIPPHILYNPDVDDTPTIVSVTEPPLNFKCPVCGQGFKCPKERRVHQTEVHSNKPQTDNNKSDSSEKVSGTTNTVIGSKLNKKPVKKLVIKPKKTEIKSENNFDNVFTNQFKLDTSAAEEPQPTEEARASVIAAVGADCDVDDKKDVKYCVCHICDVVFPDSKSLRKHKLQLHSKGYGNKHKCDTCGEVLANELQYNEHLRQHPLECRFCGKYFYRRQNLQLHIKRHLGIKPYGCEFCQKSFLTKQKLDEHKNIHTGETPIKCNMCDETFRRHSNLVQHRNRHHLNIKRKVKDYICFCGEILHSKKKLAWHKEIHDSKPKACSQCSEKFVHMASLTRHMRRAHNERFVPVEERSNENVECPICKGVYLRSSLEVHIRNHSGHRPFACLICNKDFTTKWNLKLHKWTHAARASKPYKCDQCKGAFIRESDYIAHMNSHKSVRPYICNHCGAQFIRKYNCQRHVREHEKAKTFSCQVCGKSFHRSYYLKDHMRVHSGLRPYACHICGKTSTTKSNHNKHVMIHHAKEPVSTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -