Basic Information

Insect: Sinelater perroti
Gene Symbol: -
Assembly: GCA_036346155.1
Location: JARFIY010000085.1:40938-53564[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0014 0.39 13.5 0.1 3 23 164 184 162 184 0.92

2 16 6.3e-06 0.0018 20.8 1.3 2 23 191 212 190 212 0.97

3 16 4.8e-07 0.00014 24.4 3.9 1 23 218 240 218 240 0.98

4 16 0.001 0.29 13.9 3.5 1 23 246 269 246 269 0.94

5 16 0.017 4.8 10.1 1.3 1 20 461 480 461 483 0.94

6 16 0.00047 0.14 14.9 4.6 1 23 521 543 521 543 0.98

7 16 0.0019 0.54 13.1 6.9 1 21 593 613 593 615 0.95

8 16 0.029 8.3 9.3 3.0 1 23 618 640 618 640 0.98

9 16 0.00045 0.13 15.0 5.3 1 23 698 720 698 720 0.98

10 16 0.085 24 7.8 0.0 1 23 726 748 726 748 0.98

11 16 0.0072 2.1 11.2 0.3 2 23 755 777 754 777 0.95

12 16 2.8e-05 0.0081 18.8 2.8 1 23 852 875 852 875 0.98

13 16 0.0023 0.65 12.8 4.7 1 23 888 910 888 910 0.99

14 16 0.00071 0.2 14.4 1.5 1 23 916 938 916 938 0.98

15 16 0.00088 0.25 14.1 0.0 1 23 947 969 947 969 0.98

16 16 0.0042 1.2 12.0 0.8 1 23 975 997 975 997 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0014	0.39	13.5	0.1	3	23	164	184	162	184	0.92
2	16	6.3e-06	0.0018	20.8	1.3	2	23	191	212	190	212	0.97
3	16	4.8e-07	0.00014	24.4	3.9	1	23	218	240	218	240	0.98
4	16	0.001	0.29	13.9	3.5	1	23	246	269	246	269	0.94
5	16	0.017	4.8	10.1	1.3	1	20	461	480	461	483	0.94
6	16	0.00047	0.14	14.9	4.6	1	23	521	543	521	543	0.98
7	16	0.0019	0.54	13.1	6.9	1	21	593	613	593	615	0.95
8	16	0.029	8.3	9.3	3.0	1	23	618	640	618	640	0.98
9	16	0.00045	0.13	15.0	5.3	1	23	698	720	698	720	0.98
10	16	0.085	24	7.8	0.0	1	23	726	748	726	748	0.98
11	16	0.0072	2.1	11.2	0.3	2	23	755	777	754	777	0.95
12	16	2.8e-05	0.0081	18.8	2.8	1	23	852	875	852	875	0.98
13	16	0.0023	0.65	12.8	4.7	1	23	888	910	888	910	0.99
14	16	0.00071	0.2	14.4	1.5	1	23	916	938	916	938	0.98
15	16	0.00088	0.25	14.1	0.0	1	23	947	969	947	969	0.98
16	16	0.0042	1.2	12.0	0.8	1	23	975	997	975	997	0.99

Sequence Information

Coding Sequence: ATGGACGTGCGGTGCGCAGTCATCTGCACCGCTTGCTCGAACGCTCTGAACACCGCATATGACTTCAAAAACAAGTGCCTGCGAACCGAAGAGAGGATCTTGAACTATGCTCAATATACAGGATGTAGTACTAACGCTGTGAATATCTCCGAGGTAGTCCAATTTAACGAGGCGAATACGGAAAACGGAAACCAAGAAACGAAGCCGCAGCTGGTGGACGTTCGCTACCCCATCACGCAAATCATCGAGTCCGACGTTGACATGAAACCTTTGATCTCCTGTGATACCCCAGTGTACCAGCAAATGACCACGGGGTGCCGCAAGGTGGAGGCGGGCGAGTTCAACTGCCAGGCCTTGAGCAATGGTATGGAGGCTCTGCTGCCGAGCCAGGTCTTCTTTAGCCCTGAGCTGGAGGTAGAGGTGCGCAGTTACCGCACGCCAGGCCTGGACATCATCGCTCATCCAGAGCAGACGGCACCGACACACGACTGCATCTATTGCCCGAAGACGTTCCCGCAGCCCACCGAGCTGGACGCGCATCTGGCCACCCACGCCGAGAATCGCCCGCTGAAGTGCTCGCTATGCGAGCGGCGCTTCGTTCGCAAGGACAAGCTGCAGTTGCACATGCGCATCCACACCGGCGAGAAGCCTTTCGAGTGCACGCTGTGCGGCCGCTGTTTCAGCCGCAAGGACAAGCTGAACAACCACGTGCGTACGCACACCGGGGAGAAGCCGCACCAGTGCATCCTCTGCCAGAAGAGCTTCGCGCGCAAGGACAAGATGAACACGCACATGCGCTCGCAGCATTGGCTTGCTCTGGCCAACCTGGAGATCACAGTTGTGAAACGGGAGGGCGTGGCTGAGGCAGGTGCTCCCGAGACGTCAACCAGCCAGTACGTGATGAGCCAAGTCTGCCGCACTTGCCTCGAGGTGATCAGCAACAGCACGCAGCTGTTCAGCCTCGAGAACAAAGAGCCGGCTCTGCTGGGCGCGATAAACATCAAGACCAAGCTGCAGGCCTGCGTGCCCGAGATGGCGCTGCACCGCATCCGCAACTCCGTGATTTGCCGCTACTGCCTGTACGCGCTGAATATGGCCTACGACTTCAAGACGAAGTGCCTGCAGACTGAGACGAAGCTCTTCGAGCTCGTCGGCGCGGAGGGCCAGGTCATCGACGGCACCGACCTCAACCGCTTTGTGATGATGCGCAACAACTGCTACAACAACACATACTACTGCGGCACGATGGGCCAGAACGGCGGGGCGCCCCGGCTGCTACCGCCGCCGCCACCGATGCCCCCGCCACCGCCGCCCCCCATCACTTTCCGCGCGCCACCGCCGCCCACTACCTACATTCTTCCGAGCTTCAACCATGCTTCCTACAAGTGCCCTGTGTGCCAGCAGTGCTTTGTATCAGACAGCATCTTGCGCGAGCACATGACCTGCCACAACACCTTCCCAACGAATTCTCATAATGTCAACAGCATATTCCCCACTCCCTATCCACCCAGAAACAACACATTTATTATCGGAAATGGCAGCTACAATATAACCCCTTCATACAAGTGCAACGTCTGCCAGCAATGCTTCGGATCAAATGAAATGCTGAAGGAACACATGCACCAACATGTCACCTCATTAAATCTTCACTGCAACATGTGTGACTTTAGAACAAATCTGCCAGCTTACTTAGATGAGCATCTCAAATGCCACTCCGTTGCACCCAGTAACAGCAACATTTTTGTGCAACCACAGCAAGACTACAATGCACCATCATACAAATGTTCGGTTTGTTATCAATGCTTTAGCTCCAACGAACAATTAAAACAGCACATGAGCTGCCACGAGACCCACAAATGCACCCAATGCAGTTATTATACTAATTCTGAAGCATCATTAAAAGAGCATGTAAAGACTCATTTAAATGAAGCTCCAACAAGCGTCTTGCAATCTGTACTTGAAAGTGTTGTTTGTAATACAGCCATCGAAGAGCAGGTAAATCACACAAATTCTACAGAACCCCCTGTGGAGAACCATTCTGTGCCGAAATCCACTCCAGAACCCAAGACGGGCCCAACTACTAGCTCTCTTCACCAATGTGGATTATGCAATTTCCGATCATCGCACTCATCCAGCTTGCGCCGCCATATGAAGGTGCACATGGGTGACCGCCCGTTTCGCTGCCCTGAGTGCCGCTTTGGTGCTCCTAACGAAGCCACCCTGGCAGTTCACATTGAGGTCCACAAGAAGAACCAGCCGCAGAAGTGTAGCGAGTGCGATTTCATTGCTCCTACTAAAAACGCACTGAAGAACCATATGATGTGGAAGCATGAGAAAAAAACTGAGCTCATTAAGACATCTGCACTACCAGACCCATACCAAATTACAATGAATGATATTCAGAGCGTGCTAGAGGATGACGATTGCTCTTCAGATCTGCCAACAAACCTAACTGATGAGATAGAAGATGACATTCCGGATTCAGAATCGTACATAGTGACACTTGCTGATATTCAGCACATTTTAGCAGGCCAACCAGATGAGAACGACATGTACCCTTGCACTGTTTGTGGGCGACAGCTGAAGCATCTATACTTACTGCGGAGGCACATGCGAAAGTATCACGGCATATCTAGCAGCAAACGGATCAATCGCACTGTCTACCAATGCACCCGATGCAATTTTCGCTCGAAGGTCAAGAGTCACTGGCAGGTGCATATGAAGACACACACGGGGGGGAAGTACTACAGCTGCAAGCAGTGCGATTATTCGACAGTGTACTGGAGCAACATGGACAAGCACAAAAAGGTTCATCAGGGGCAGGAACTCTCTGAATGCTTTGAATGCCCACTATGTGGCTACCGCGCTGCCAAGCAGATCTCGCTTATGGCACACATGTCAGTGCATGCCGACGAAGGCGAGTACAAATGCACACAGTGCTCCTTTACGACCGCGTCCAAAACGGGGCTGCTCGATCATTTGGAGACGCATTCTGCTGGCTCTTTTGGGCGACACTTCATTGATAGCTTCTCAGAGGATATCCCTAATGAACAAGTTAATGGTGTTGGGGCCACCGAGACCGCTAATAATACTCAGGATGCTTCGAATCCCCCTCTATCTGATAAGGAGAATAATGAGGACGTTAATGGTAGTATCTCGGATGCTGAACTTGCCAACGTTGCAAGTTCAGCAGACATTGCCGACATTCCTGATAATGAGATTTCAGCTATCATTGAAACTATGTCGGTTATGTCTAACAATGACGCTAGCATGGGACATGACCTTGAATTTGAACCTGAACCTGAACCCGAACCTGAATCCGAGCTTGGGCTCGAACCTGAACCCGAATCCGAGCTTGGGCTCGAAGCTGAACCTGAAATTGGGCTTGATCCGGAGCTCGAACCTGAACACATGCTCGAGTCCGAGCATGAGCTCGAATCTCAAGATCTGCATGAGCATGACTCTGAACCAGTGTCGGAGCTTGATTTTGAGCCTGAACCGGAACTGCCGTTTGAGCCCAAACTCGAGCTCGATACCAATATCCTGACTACTTAA
Protein Sequence: MDVRCAVICTACSNALNTAYDFKNKCLRTEERILNYAQYTGCSTNAVNISEVVQFNEANTENGNQETKPQLVDVRYPITQIIESDVDMKPLISCDTPVYQQMTTGCRKVEAGEFNCQALSNGMEALLPSQVFFSPELEVEVRSYRTPGLDIIAHPEQTAPTHDCIYCPKTFPQPTELDAHLATHAENRPLKCSLCERRFVRKDKLQLHMRIHTGEKPFECTLCGRCFSRKDKLNNHVRTHTGEKPHQCILCQKSFARKDKMNTHMRSQHWLALANLEITVVKREGVAEAGAPETSTSQYVMSQVCRTCLEVISNSTQLFSLENKEPALLGAINIKTKLQACVPEMALHRIRNSVICRYCLYALNMAYDFKTKCLQTETKLFELVGAEGQVIDGTDLNRFVMMRNNCYNNTYYCGTMGQNGGAPRLLPPPPPMPPPPPPPITFRAPPPPTTYILPSFNHASYKCPVCQQCFVSDSILREHMTCHNTFPTNSHNVNSIFPTPYPPRNNTFIIGNGSYNITPSYKCNVCQQCFGSNEMLKEHMHQHVTSLNLHCNMCDFRTNLPAYLDEHLKCHSVAPSNSNIFVQPQQDYNAPSYKCSVCYQCFSSNEQLKQHMSCHETHKCTQCSYYTNSEASLKEHVKTHLNEAPTSVLQSVLESVVCNTAIEEQVNHTNSTEPPVENHSVPKSTPEPKTGPTTSSLHQCGLCNFRSSHSSSLRRHMKVHMGDRPFRCPECRFGAPNEATLAVHIEVHKKNQPQKCSECDFIAPTKNALKNHMMWKHEKKTELIKTSALPDPYQITMNDIQSVLEDDDCSSDLPTNLTDEIEDDIPDSESYIVTLADIQHILAGQPDENDMYPCTVCGRQLKHLYLLRRHMRKYHGISSSKRINRTVYQCTRCNFRSKVKSHWQVHMKTHTGGKYYSCKQCDYSTVYWSNMDKHKKVHQGQELSECFECPLCGYRAAKQISLMAHMSVHADEGEYKCTQCSFTTASKTGLLDHLETHSAGSFGRHFIDSFSEDIPNEQVNGVGATETANNTQDASNPPLSDKENNEDVNGSISDAELANVASSADIADIPDNEISAIIETMSVMSNNDASMGHDLEFEPEPEPEPESELGLEPEPESELGLEAEPEIGLDPELEPEHMLESEHELESQDLHEHDSEPVSELDFEPEPELPFEPKLELDTNILTT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -