Sper017416.1
Basic Information
- Insect
- Sinelater perroti
- Gene Symbol
- -
- Assembly
- GCA_036346155.1
- Location
- JARFIY010000055.1:1068085-1070586[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00022 0.064 16.0 1.5 1 23 336 358 336 358 0.96 2 12 0.49 1.4e+02 5.5 0.3 9 23 368 383 361 383 0.85 3 12 4.7e-07 0.00014 24.4 1.6 2 23 456 477 455 477 0.97 4 12 0.00059 0.17 14.6 0.2 1 23 483 505 483 505 0.97 5 12 0.00032 0.093 15.5 1.4 2 23 512 533 511 533 0.97 6 12 3.6e-06 0.001 21.6 1.1 1 23 539 561 539 561 0.98 7 12 0.00018 0.052 16.3 0.8 1 23 567 589 567 589 0.98 8 12 1.3e-07 3.8e-05 26.1 1.5 1 23 597 619 597 619 0.98 9 12 0.025 7.1 9.5 0.2 1 23 625 647 625 647 0.95 10 12 1.8e-05 0.0051 19.4 1.3 1 23 653 675 653 675 0.98 11 12 0.00032 0.093 15.5 0.6 1 23 681 703 681 703 0.98 12 12 3.6e-06 0.001 21.6 0.5 1 23 709 731 709 731 0.98
Sequence Information
- Coding Sequence
- ATGGCGGCCGAGGACGGCGCGAGATACGGCGACTTGTGCAGGCTGTGCGCTACCAAAACGAACGTGGTGCTGGGCATCAACATTTTCGAGAGCGAAGGTGCCATGCGGCAGATCAACAAGAAGATCGAGACGTGCCTGCCCATTCAGGTGCACGAGTCGGACGAGCTGCCCAAGATGATCTGCGAAAGCTGCCTATACAAGCTCGAGCTGTTCTCCGACTTCCGGGAGCGGTCCGTGCGCACGGAGAGCATCCTCATAACGCTCTTCAAGGAGATCAGCGCTGCTGCGAAGCTGTCAGCTGACCAGCAGTTGGTGAAGCTGGCGCAGCCGCTGGACGTGGACATGATCGTGATACAGCACCACCACCAGCTGCTCAATGAGCAGGAGATGCCGAGCGTCGGCGAGCTCGACATCTCGCACATGCAGCAGCGGGACATGATTGTGGAGCACAAGATAACTCTGTCACAACCGAATGTCGACATTAACGCGCACTCGTTAGCGAGCATCGATTTAAATTATCATGAACTTCCGGGGCAGGGCTTTAAAAGTCAGGGTGAAATTTTAGTTGACGGCGGTAGCGACGTGCGGTACACAGAAGACAATTTACATCTTATTCAACAGGAACACCAGCTGTTGAGTGAGCAGTATCGGTTGCAGCAAGACTTGCAAGCTGATATCGGTGAGGGTAATGCGGAGTGTAATATCAGGGTTGCAACTGGTCATAGTCAACCAGATGAAAACAATGTAGAGTCGAAATTTATAGTGAAATTGGAAGCAGCTTTAAAGTCTGACTCGATAGAAAATGAAACCAACGATAAAGTCTCGTCAGTGGACTGCAGGCAGCCAGACCAAGGCAACAGCAACGATAGTCAGTTAATCGTTGATGACCACTTCAGCGACGCAAACAATGATGACGGCTCGGAGATGTACATGCAACCGGTGATTTCCAGTGAAAACAGTAACGCAAGCATCTGCTTGGGTGCTTCGACCAACAGTACAGAGTGGTTCTATTGCAACTTGTGCGGGAAGGATTTTAATGAAAAGTCAGAGTTCCAGTTGCATTATGATCAGCACTTTAGCAAGTGCATCACATGCTTGGATGTGTTTACAAGCAGAGATGCATTGAATGCGCACAGGAAAGAGATGCACGGATCGAATGAGGAAGTTAAGGAGCAGCCAGTGAAAACTAGATTGAAAAGAGCTACTGTGCCAGTAAAGAAAGAGAAGGATAGTTATAGGGATGAGAGCAATAGCGAGAACGAATGCGCTAACAATGCAGACAATGTTGAGGATGAGGAAGATGAGGATGACCCGGAGGTGGATTCGCTCACTGTGAATGGCAAGCGGAAGAAATGGACGCCCAAGGAGTGTAAGGAATGTGGGAAGTCATACAAAACTAACTATAAATTGGCGGAGCACATGCGCAAGCACACTGGAGAAAAGCCGTACAAGTGTGGCTCGTGCGAGAAGGCTTTTAGGTCAAAAATCGGCTTAGCACAGCATGAAGCTAAACATACCGGTCAGTATGATCTATCTTGTCCCACATGCGGAAAGggatttcaatgcaaaagttATCTAATGGTACATCAGAGGGTTCATTCTGATGTTAAGCCTTATCCATGCACTATATGCGGGcgcaatttcaaaacaaagcaATCCCTGCTGGATCATACAAACCGCCATTTGGGTGTGAAGCCCTACATGTGCGACATTTGTGGGCGCGGATTCATCACTAAAGGCTTGTGCAAAGCTCACCAGAAGGTTCACACGGGTTTGGATAACAGAAAATTCTCGTGCAACATTTGCAACAAAATGTTTGTctcgaaaagttatttgcaaaCTCATTTAAGGATACATACCGGGGAGAAGCCGTTCATCTGTGAAGTTTGCAGCAAGGGATTTCTGACGCGGGTTGATCTGCGTATCCATTCGACGATGCACACAGGGGAGAAGTCATATGTGTGCGAGATGTGCGGTAAGGCATTTGCACGCAGAGACGCCTTGCGGTGCCACCGAAGATCGCACACTGGCGAGCGGCCATATAGCTGCGACCAGTGTGGCCAGACGTTCACTCAGTTTTCGCCCATGGCCATCCATAAGCGACTGCACACGGGCGAGCGGCCCTACACCTGTGAAGTGTGTGGGAAGGCGTTTGTGTCGCGGTCCACCATGATGTCTCACTGGAAAAAGCATGTCCGATAA
- Protein Sequence
- MAAEDGARYGDLCRLCATKTNVVLGINIFESEGAMRQINKKIETCLPIQVHESDELPKMICESCLYKLELFSDFRERSVRTESILITLFKEISAAAKLSADQQLVKLAQPLDVDMIVIQHHHQLLNEQEMPSVGELDISHMQQRDMIVEHKITLSQPNVDINAHSLASIDLNYHELPGQGFKSQGEILVDGGSDVRYTEDNLHLIQQEHQLLSEQYRLQQDLQADIGEGNAECNIRVATGHSQPDENNVESKFIVKLEAALKSDSIENETNDKVSSVDCRQPDQGNSNDSQLIVDDHFSDANNDDGSEMYMQPVISSENSNASICLGASTNSTEWFYCNLCGKDFNEKSEFQLHYDQHFSKCITCLDVFTSRDALNAHRKEMHGSNEEVKEQPVKTRLKRATVPVKKEKDSYRDESNSENECANNADNVEDEEDEDDPEVDSLTVNGKRKKWTPKECKECGKSYKTNYKLAEHMRKHTGEKPYKCGSCEKAFRSKIGLAQHEAKHTGQYDLSCPTCGKGFQCKSYLMVHQRVHSDVKPYPCTICGRNFKTKQSLLDHTNRHLGVKPYMCDICGRGFITKGLCKAHQKVHTGLDNRKFSCNICNKMFVSKSYLQTHLRIHTGEKPFICEVCSKGFLTRVDLRIHSTMHTGEKSYVCEMCGKAFARRDALRCHRRSHTGERPYSCDQCGQTFTQFSPMAIHKRLHTGERPYTCEVCGKAFVSRSTMMSHWKKHVR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -