Sper008814.1
Basic Information
- Insect
- Sinelater perroti
- Gene Symbol
- -
- Assembly
- GCA_036346155.1
- Location
- JARFIY010000015.1:842944-848508[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 8.4 2.4e+03 1.6 0.2 2 18 60 76 59 76 0.89 2 14 2 5.9e+02 3.5 0.5 4 23 172 192 170 192 0.89 3 14 1.7 5e+02 3.7 0.4 14 23 208 217 200 217 0.77 4 14 0.0007 0.2 14.4 2.1 2 23 223 244 222 244 0.97 5 14 3.2e-06 0.00092 21.8 2.5 1 23 250 272 250 272 0.98 6 14 2e-06 0.00057 22.4 1.9 1 23 278 300 278 300 0.99 7 14 4.9e-07 0.00014 24.3 0.9 3 23 400 420 399 420 0.99 8 14 4.8e-06 0.0014 21.2 1.4 1 23 426 448 426 448 0.99 9 14 2.3e-07 6.5e-05 25.4 0.6 1 23 454 476 454 476 0.98 10 14 2e-06 0.00058 22.4 1.6 2 23 482 503 482 503 0.97 11 14 3.5e-05 0.0099 18.5 1.8 1 23 509 531 509 531 0.96 12 14 1e-07 3e-05 26.5 2.6 1 23 537 559 537 559 0.98 13 14 0.00021 0.06 16.1 5.3 1 23 565 587 565 587 0.98 14 14 0.00032 0.091 15.5 4.3 1 23 598 621 598 621 0.96
Sequence Information
- Coding Sequence
- ATGGATCTCGCAAGCTGTTTCTATCTGGATGTGAATAAGATATGCCGCGCCTGTCTAAGCGAAACTGCTGATATGATAAACATGTCCAGCAGCGCGGAGGGGCAGGACAACCTGCTGGAGATGTTCGTTGCTGTAGTCAGCTTTCAGTATGAAAACGGCAATCCGCTGCCCACGCTGATATGCAAGCAGTGCGAGGAGAAGCTCAATGTCTCCTACAACTTCCGCCGACAATGCCAAAAGTCCAACGAAATCCTGCTGGAATACGTCAACAGAAGTAAGGAGCCACCCAATGGGGTTTGTACGGCTGAAACCCTATCAGAGCTGTGCTCAGACAATGACGGTGGGGAAGACTCAGATGGGTCTGATTCCGACCTCGATTGTAAGAGAAAGGAGCATAATGTGCCCGAAAGCAGTAATGGCATGCAGAAGATGCGGCTGACTCAATATTCGTATGATGAAGTGTCGGAGGCAATTCGTAAGTCCAGCCagaagttttttgaaaatagggAGTGCATCAAATGTGGCTTTATCGGTAGTAACACCAGAGCATTGTCAGTTCACATGATGCATTTGCACAAGGAAATAAAGGAACGGTGGTGTGCCCAGTGCAATAAAGAAATCGACAACCTAACTGAACATATGAAGATTCATGCAGTTGAGGATTTAAAGTGCCAGTTTTGTGAGAAGATTTTCCAAGCGAAGGGTCATTTAACAGAGCACTTGCGCAGCCATTCTGAGGTTCGGCCTTTTAAGTGTGATGTATGCGAGAAGAGTTTTATTTCTCAGCGCCATTTAAATGTGCACTTCCGAATTCATTCTAAAGAAAAGCCTTATAAATGCCAGCTGTGTCCCAGATCGTTCAGCCAACGGATCTCCCTGAAAACCCATTTACGGCAGCATCAAAAAGGTATTGATAAGTATGTATGTCTTAAGGAAAAGCAGCTCTGGCTTTTGGATTGTTTATGGTCTAATTGTTCTTATTGGGCAGATTTTGAAGAATTGCGCGAGGAGGTCGGCGAGAACCAGCTCGATATTCAAGATAGGTTGGAAGGTATCTTCAAAACGTATGGTTCGCAGAATTACTGTTACAAGTGCGACAAGAAGGTGAGAAGTCTAGTCGTGCACAACAAGCAGATGCATTCCGATGAGTTCAAGGTGTTAAATGAGTATGGGGACAACGTGCTGGATAACAAGCTGTGCACTGTATGTGGAAAGCAATTCAAGACTGCATCGAAGCTAAGGTTGCACATGAGAGTTCACACAGGAGAGGCGCCTTACAAGTGCTCCTACTGCGACAAGAGGGTTACCACACGCAACCAGCTGGTGGTGCACGAGAGGACCCACACTGGCGAAAAGCCATATGTTTGTCATGTATGCGGGAAGGGTTTTGCTCAATCCAGTGTCCTGAACACCCACATGCGGTTACATACAGGCCGGCCGGAAGTGTGCAACGTGTGCGATCAGAGGTTCTGCAGGCCAGCAGAGCTGCGCCTGCACATGCGCAAGCACACAGGCGAAAAACCTTACCTTTGCACCAAGTGTGGCCAAGCGTTCATACAACGCAGCCACCTAGTTGAGCACAACAAGACCCATAGCGACCTTCGCCCGTTCCAGTGCACGTACTGCGAGAAGTCGTTCAAGCAGAACTCATACCTGAAGTCGCACATCCAGATTCACCTTGGTTACAAACCATTCAAATGCAGTCAATGCTCGTACGCGTGCCGCCAAAGCTACAGTCTCACCCAGCACATGAAGCAGCATTCGAACGACGCGCCCAGGTCGGACCGGCCGCACACGTGCCTGCTCTGCAACAAGACTTTCACTACGCATGCCATGCTTACGTCCCACACGAACTCGATCCATAATGTGAGCCCGCCATTGTATGAGTAA
- Protein Sequence
- MDLASCFYLDVNKICRACLSETADMINMSSSAEGQDNLLEMFVAVVSFQYENGNPLPTLICKQCEEKLNVSYNFRRQCQKSNEILLEYVNRSKEPPNGVCTAETLSELCSDNDGGEDSDGSDSDLDCKRKEHNVPESSNGMQKMRLTQYSYDEVSEAIRKSSQKFFENRECIKCGFIGSNTRALSVHMMHLHKEIKERWCAQCNKEIDNLTEHMKIHAVEDLKCQFCEKIFQAKGHLTEHLRSHSEVRPFKCDVCEKSFISQRHLNVHFRIHSKEKPYKCQLCPRSFSQRISLKTHLRQHQKGIDKYVCLKEKQLWLLDCLWSNCSYWADFEELREEVGENQLDIQDRLEGIFKTYGSQNYCYKCDKKVRSLVVHNKQMHSDEFKVLNEYGDNVLDNKLCTVCGKQFKTASKLRLHMRVHTGEAPYKCSYCDKRVTTRNQLVVHERTHTGEKPYVCHVCGKGFAQSSVLNTHMRLHTGRPEVCNVCDQRFCRPAELRLHMRKHTGEKPYLCTKCGQAFIQRSHLVEHNKTHSDLRPFQCTYCEKSFKQNSYLKSHIQIHLGYKPFKCSQCSYACRQSYSLTQHMKQHSNDAPRSDRPHTCLLCNKTFTTHAMLTSHTNSIHNVSPPLYE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -