Sper032334.1
Basic Information
- Insect
- Sinelater perroti
- Gene Symbol
- -
- Assembly
- GCA_036346155.1
- Location
- JARFIY010000132.1:6877337-6890700[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.6e-05 0.0045 19.6 0.4 1 23 194 216 194 216 0.98 2 11 6.6e-06 0.0019 20.8 2.7 1 23 222 244 222 244 0.97 3 11 4.4e-08 1.3e-05 27.6 1.9 3 23 252 272 250 272 0.96 4 11 0.028 8 9.4 0.1 1 13 278 290 278 293 0.88 5 11 0.0065 1.9 11.4 0.3 5 23 293 311 292 311 0.96 6 11 1e-08 3e-06 29.6 0.7 1 23 317 339 317 339 0.97 7 11 2.9e-06 0.00082 21.9 0.1 1 23 345 367 345 367 0.98 8 11 4.6e-06 0.0013 21.3 2.3 1 23 373 395 373 395 0.98 9 11 4.7e-07 0.00013 24.4 0.4 1 23 401 423 401 423 0.99 10 11 2.2e-06 0.00063 22.3 1.0 1 23 429 451 429 451 0.97 11 11 7.8e-07 0.00022 23.7 2.8 1 23 457 479 457 479 0.99
Sequence Information
- Coding Sequence
- ATGGCCTTGCATACCATACAGACGGACAAAATCTGCAGAACGTGCCTGTCAGAAGAAAGTAACATGATGTCTGTATTCAGTCCAGTAGACAATACCAGCGGCGACACGGCCAGGCTAGTAGAAATGCTGACATCCTGTACCGCTGTGCAGGTCGCCGAAGGAGACGGGTTACCTGGCCAGGTTTGTCTGCAATGTGTTCACTACATCACCCGAGCGTTTTCATTCAAACAGTTGTGCGAGCAGTCAGATTCGACGTTGCGGCAGTTGTTAGGCAAGCCAACGATGGCTTCCTATGTAGACCAGTTGAAGCCAAATGATCACATGGAATCTTTAACGCCCTTGCAGGTCATGGAGCAAAAACCCATGGAGAGTTTGGACTTAAAGATGGAGATAATGGAAAATGGTGGCATTTTATTTCCACTTTCAGGTATTGAGCATTCAGAAAGTGAAACCGATAATACACCTGTAGATGCAGCCATATTAAATGTAGAAGATAAGTCAGATGCTATGAATTTAGAGGACAAgcctaaaaaagaaattaaaaagaaaaaggttaaagatgACACAGAACAGCCTATCTATCCCTGTGAAGAATGTACAGCATGCTTTACAACAATTGCAGACTTAaaaGTACATGCTCGGACACACCCAAAAGCCACTAGGCACATCTGTAAAGTTTGCAATCAGGGATTTGCGAGTGCCAGCACGCTTTGTCGACACATGAAAGTACATGATGGTGCGAAGCGGCACTTGTGTAGTGAGTGTGGCAAAGGATTTTCCCGGTCAGACGATTTAACCAGACATTTACGTACACATACTGGAGAGAAGCCTTTCGCATGTAAATTGTGTGGAAAGGCTTTTGCACAATCATTTAGTGTGTGTGGAAAGAGGTTGTGTGGTTCTGGTTCATTAGCAATGCATATGAAGACACATACAGGACTGAAAGATCACATATGCCCCTACTGTGGCAAAGGTTTCACCACCCCCAGCAATCTCATCATCCACAAGCGCACACACACAGGTGAACGACCATATGTATGTAGCGTTTGTGGCAAAGGCTTCCCAGATCCGTCCCGCCTTACCGTGCACTCGCGTTCGCACAGCGGCGAGAAACCATACGTCTGCTCATTTTGCGGACGAGGCTGTGTGAGCTCCTCGCAGCTGAAAAAGCACACGCGCATACACACGGGCGAAAAGCCCTACTCGTGTACCCTTTGCTCGAAGGCTTTTCCAAGGAGCGAAGACCTGCGCATCCACATCAAAACTCATACTGGCGATCGTAACCATGTTTGTGATGTGTGCAAAAAAGGCTTCTACCAGGCGTCTACCTTAAAAGTACATTTGCGGATCCACACGGGTGAAAAGCCTTACACGTGTCACATTTGCAACAAATCCTTTTCACAGACAGGCCCCCTCTCGACACATATGAAGACGCACTGA
- Protein Sequence
- MALHTIQTDKICRTCLSEESNMMSVFSPVDNTSGDTARLVEMLTSCTAVQVAEGDGLPGQVCLQCVHYITRAFSFKQLCEQSDSTLRQLLGKPTMASYVDQLKPNDHMESLTPLQVMEQKPMESLDLKMEIMENGGILFPLSGIEHSESETDNTPVDAAILNVEDKSDAMNLEDKPKKEIKKKKVKDDTEQPIYPCEECTACFTTIADLKVHARTHPKATRHICKVCNQGFASASTLCRHMKVHDGAKRHLCSECGKGFSRSDDLTRHLRTHTGEKPFACKLCGKAFAQSFSVCGKRLCGSGSLAMHMKTHTGLKDHICPYCGKGFTTPSNLIIHKRTHTGERPYVCSVCGKGFPDPSRLTVHSRSHSGEKPYVCSFCGRGCVSSSQLKKHTRIHTGEKPYSCTLCSKAFPRSEDLRIHIKTHTGDRNHVCDVCKKGFYQASTLKVHLRIHTGEKPYTCHICNKSFSQTGPLSTHMKTH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -