Basic Information

Insect: Sinelater perroti
Gene Symbol: -
Assembly: GCA_036346155.1
Location: JARFIY010000238.1:4630720-4632323[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.031 8.9 9.2 1.2 1 23 146 168 146 168 0.98

2 12 0.00013 0.038 16.7 1.5 2 23 175 196 175 196 0.97

3 12 2.5e-07 7.1e-05 25.3 1.6 1 23 202 224 202 224 0.99

4 12 0.00012 0.035 16.8 0.3 3 23 232 252 230 252 0.96

5 12 1.4e-06 0.00039 22.9 0.3 2 23 259 280 258 280 0.97

6 12 6.8e-06 0.0019 20.8 2.7 1 23 286 308 286 308 0.96

7 12 6.3e-06 0.0018 20.8 2.4 1 23 314 336 314 336 0.96

8 12 5.3e-08 1.5e-05 27.4 0.6 1 23 342 364 342 364 0.99

9 12 1.9e-06 0.00054 22.5 0.2 1 23 370 392 370 392 0.98

10 12 5.7e-08 1.6e-05 27.3 1.5 1 23 398 420 398 420 0.98

11 12 5e-06 0.0014 21.2 0.2 1 23 426 448 426 448 0.98

12 12 4.8e-06 0.0014 21.2 0.5 1 23 454 476 454 476 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.031	8.9	9.2	1.2	1	23	146	168	146	168	0.98
2	12	0.00013	0.038	16.7	1.5	2	23	175	196	175	196	0.97
3	12	2.5e-07	7.1e-05	25.3	1.6	1	23	202	224	202	224	0.99
4	12	0.00012	0.035	16.8	0.3	3	23	232	252	230	252	0.96
5	12	1.4e-06	0.00039	22.9	0.3	2	23	259	280	258	280	0.97
6	12	6.8e-06	0.0019	20.8	2.7	1	23	286	308	286	308	0.96
7	12	6.3e-06	0.0018	20.8	2.4	1	23	314	336	314	336	0.96
8	12	5.3e-08	1.5e-05	27.4	0.6	1	23	342	364	342	364	0.99
9	12	1.9e-06	0.00054	22.5	0.2	1	23	370	392	370	392	0.98
10	12	5.7e-08	1.6e-05	27.3	1.5	1	23	398	420	398	420	0.98
11	12	5e-06	0.0014	21.2	0.2	1	23	426	448	426	448	0.98
12	12	4.8e-06	0.0014	21.2	0.5	1	23	454	476	454	476	0.99

Sequence Information

Coding Sequence: ATGGAAAGTTTAAGTCTGTTAAATGTTGATAAAATGTGCAGAGCATGCATGactgaaaagaaaaacatgtcGTCTGTGCACGAGTTGAATACTAAGGAAATGTTTGTTTACTGTACATCTTTGACTGTAGACAGCGATGATAAGCTTCCTCCATTCATATGTGATCAGTGTAAAATCGAAATGGATAGGGCCTTTCAGTTCAAACGGTTATGTATCCAGTCATATCTTAAACTAGCAGAGTACAACAGAACACTGCAAGACATCGATAACGTTAGCTTGTCCGAGTATGTAAAAAATGATGGCAATTGTGAAGAAGAGTATCAGAAAGAAATCGTTTACAGTGATGTGGATGATGCAAGCAATGATACGGATTTTCAAAAACCAGAAAAGACTGTCAaggcaaagaagaaaaagaaatttaaaagagaggGAGTGTTTAAATGTGACATATGCATGGAAGGCTTTGATTTGAAGTGCGACTATGAAACGCACATGATATCTCATCCCGATGACGATAAACCTGTATGCACACTATGTAACAAACATTTTGCAGATTTGAAAGTATTGAAAAGGCATGTGCGTATTCATATGTTGAGCAAACCATTTCAATGTGAATTATGTCAGAAGAGTTTTTCTGAATCTGGTAGCTTGACAAGGCACTTAAGAAAGCACCGTGGTGAAAAGCGTCACCTTTGTTCTGTTTGTGGCAAAGGCTTTTATGAAGCAAATGTGCTAGCTGTTCACATGAGAACGCATACCGGAGAGAAACCAATTGAGTGCAAGATCTGCCAAAAAAGGTTTGCCGATCCAAACGGATTGAGAAGCCACATGAAGTCGCACACAGGCGAAAAGAAGTATTTGTGCAACATTTGCGAGAAGTCATTTTCACATTCGTTTGTTCTGCGAAAACATTTAAGGGTGCACAGTGGTGAAAGGCCATATCTGTGTTCAGTTTGTGGGAAATCATTTACGCAGAGACATTATGTTTCGGTGCACATGCGTCAACACACTGGAGAATTACCATATACGTGTAGTATATGCAACAAAGGCTTTACGCAAAATAGTCAAATGGAAGTACACATGCGCATCCATACAGGTATTAAACCTTACATTTGTGCTGTATGTGGAAAGGCTTGTGCCAGATCTGGTGATTTAGTAACACACATGAGGTCACACACAGGTGAAAAACCTTTTGTGTGCTCAATTTGTCCAAAGCGTTATGTAACTTCAAGTCATTTAACTGTGCACATGCGCAGCCATAGCGGCGAGCGCAGTCATGTTTGTCCTACGTGTGGGAAAGGTTTCACGGAAGGCCAAGGATTAAAAGCTCACATAAGAACGCACACAGGAGAGAAACCATATCAATGTGCAGTGTGCGGGCACCGATTTGCTCAATCCGGTGCCCTAGCAACTCATCGGAAAACTCATTTGAAcgataagaataataaatag
Protein Sequence: MESLSLLNVDKMCRACMTEKKNMSSVHELNTKEMFVYCTSLTVDSDDKLPPFICDQCKIEMDRAFQFKRLCIQSYLKLAEYNRTLQDIDNVSLSEYVKNDGNCEEEYQKEIVYSDVDDASNDTDFQKPEKTVKAKKKKKFKREGVFKCDICMEGFDLKCDYETHMISHPDDDKPVCTLCNKHFADLKVLKRHVRIHMLSKPFQCELCQKSFSESGSLTRHLRKHRGEKRHLCSVCGKGFYEANVLAVHMRTHTGEKPIECKICQKRFADPNGLRSHMKSHTGEKKYLCNICEKSFSHSFVLRKHLRVHSGERPYLCSVCGKSFTQRHYVSVHMRQHTGELPYTCSICNKGFTQNSQMEVHMRIHTGIKPYICAVCGKACARSGDLVTHMRSHTGEKPFVCSICPKRYVTSSHLTVHMRSHSGERSHVCPTCGKGFTEGQGLKAHIRTHTGEKPYQCAVCGHRFAQSGALATHRKTHLNDKNNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00978612;
90% Identity: -
80% Identity: -