Sper032564.1
Basic Information
- Insect
- Sinelater perroti
- Gene Symbol
- -
- Assembly
- GCA_036346155.1
- Location
- JARFIY010000132.1:10556297-10580341[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 1.2 3.5e+02 4.2 6.6 2 23 176 197 175 197 0.95 2 16 3.9e-06 0.0011 21.5 5.0 1 23 202 224 202 224 0.99 3 16 5.1e-05 0.015 18.0 5.1 1 23 230 252 230 252 0.97 4 16 5e-05 0.014 18.0 1.2 1 22 258 279 258 279 0.95 5 16 1.7e-05 0.0048 19.5 1.1 1 23 286 308 286 308 0.96 6 16 0.00036 0.1 15.3 0.3 1 23 488 510 488 510 0.96 7 16 2e-06 0.00057 22.4 5.9 1 23 516 538 516 538 0.97 8 16 9.1e-07 0.00026 23.5 3.5 1 23 544 566 544 566 0.98 9 16 8.7e-05 0.025 17.3 0.9 1 23 572 595 572 595 0.91 10 16 0.0056 1.6 11.6 0.8 1 23 607 629 607 629 0.98 11 16 0.00026 0.074 15.8 4.7 1 23 635 657 635 657 0.98 12 16 2.1e-06 0.0006 22.4 0.5 1 23 664 686 664 686 0.96 13 16 4.2e-06 0.0012 21.4 1.0 1 23 692 714 692 714 0.98 14 16 3.9e-07 0.00011 24.6 0.9 3 23 722 742 720 742 0.96 15 16 6.8e-05 0.02 17.6 0.1 1 23 748 770 748 770 0.99 16 16 0.037 11 9.0 2.2 1 23 775 798 775 798 0.97
Sequence Information
- Coding Sequence
- ATGGAGAACGTGGAGTACGACTTCAGCAAAATTTGCCGCGTGTGTAAGAGCGAGTCTGCGGACATGCAGTCCGTTTTTGCGGCCGAGGATGGCGACGGCCAGAGTCCCCGAATTGACGAGATGCTAATGGCATGTTCGGCGGTTTTGGTGAGCCTGGGCGACGGGATGCCGGATCTAATATGTCGCGCTTGTACGCTGCAGCTCAACAGCGCCTATGCTTTCAAAAAGCAGTGCGAGAGCACCGATTCGAGCCTGCGGGAGTACCTGGACATGCAGGCCAACGAAACTGTCAAGGAAGAGCCCCAGCATCCCGTCTGCGGCGAGGTGGACGTTCTAAATCACGTTTTGAGCGACACCGACGTAATTATTGATGCCATCGTCGATTGTGCAGCCTCGCAGCATGATAGCCAGTTAAACAATTTGGCAGAAATGAAGATGGAAACTGAGCCGAAGGAAGAAATGTACGAAGAGAACATCAGCAACAGTGATTTCATTCAGTTTCTAGATAATACTCAGATACTGTTAACATGCCGAACGTGCTTGAAATGCTTTACTACACTCGATGGGTTAAAGTGTCATAAGCGTCTTCATACTGGAAATCTATTTAAATGTAAAGACTGTGGAAAGCAGTATACTAGGCAGAATCATCTTTATCGCCATGAGATGACGCATAGCCGTCGGAAAGTGCATGTCtgtaaaatatgcaataaaacgTTGACTAGATTTGAGCATCTCAAGCGGCACCTGATAACGCATTTGAAAGATAAGCCTTTTAGTTGTACTACCTGTAATCGTGGGTTTAACAGGTCGGAGCATTTGGCAAATCATATCAAACGGTGCAAGGGCGATCGGGTGCATATATGTAACATTTGCAATAAAGGTTTCAATCGGGAGGACAGTTTGGAAGTGCATAAGAGATTGCATGATAACAAGATGCCAGTGTTGCCTACATTAGAGAATTTGGACAACATTGATGAGCATTATGTGGAGATTGAATATGAAGCAAATGAGAACGACAGCACACTTCCCTTTTCAGACTCCGATAGTGAGACGGGGGATGTCACTGACTGCTTGGAACCCCAAGTTGATATAGCTGAAAATACTGAACCTGTCAAGTTATCTGAAATCACAGATATTGATTCTGTTCCTTTTTCCACCACAGGGAATGAACAGTACGCAGAAATTGATGCACATGAACTGCTTGATAACAAAAACATAGTAGAAGAGGAATTGACGGAACAGGACAATTCTAGCCAATTTGAAGTAAAAGAGGAGGAGGAAAGCAACAGCGAAGATTCGGATTATCTCCCAACTAAACCTGTGGTCAAGGTGAAACGAAAACGCGGCCGCCCCCGTAAACACGCCATCCCTTCCAGAACTGGTAGGCCGCGTGGCCGGCCGCCTTTGCAGAAAATTAAAGCGGAACCTGCAGACGAGCACAGCAATGAAGTAGAAGGCGAATATCCGTGTCCAGCCTGCGACAAAGTGTTTACAAAGATGAATCTGCTAGAAAAGCATGCCTTCAAACACGAGGGCTTAAAAATTCATCCTTGCACGGTatgtaataaaaagttttcaCGAAGTAACCATCTGAAGCGACATATGTTATCACATTCAACACAGAAACCCTTCTCCTGCGAAATCTGCACCAAGAGCTTTAACAGGCGGGATCACTTGATGCAACACATGAAACTGCATGTGCGCGAGCAGGATTACGAGTGCGAGATCTGCAAAAGAACATTTGGCCGGGCAAACCACTTGGCAAAACATAAGGCTGCTAAGCACAACATAGGCGAGAAGATTATGGGTGAAAAGAAGTACCAGTGTTCTGTGTGCTTGAAGGGCTTTACGACTGAGAAGTATAGAGATGTGCATATGAAGGGTCATATGGGTGAGAAGAAATATCAGTGCCGGACTTgtgataaaacttttctttctaaatctcACCTGACTGAACACATTAAATTTCATAGTGAGaattctaaaaagtttttgtgttCCGAGTGTGGGCAACGATTCATTCGTAATGATTATCTTGTGATTCATATGCGGCGACATCGAGGAGAAAAGCCATTCAAGTGCCAATATTGCGGAAAAGGTTTCCCTAGAACAACAGACCTCACTGTTCATGAACGTTACCACACCGGTGAGAAGACGCACCTCTGTACAATTTGTGGTAGGGGATTTGGAAGggCGTATAATCTTACTGTACATATGCGAACTCACACGGGTGAGAAGCCATACCAATGCACTTATTGTGAAGCTGCCTTTGCACAGGGCAATGATTTAAAAGCTCATGTTCGTCGGCATACAGGGGAGAGGTTTCAATGTGATCACTGCAGTGAGAGTTTTCTGATGGGTTATTTATTAACTCAACATAAACGGACAGTACATGgTCTGAATGTGGTAAGTAACATCAGAAGACTACAGCCAGTGCTGAAGCGCCAGCCAGATGATTCAGACGACCAGCAGCCTATCACTATACCACTACCAACTCCAGTCGTGCCAACATCAGTGTTTAATGCACAACTACAAGCCCAATTGGCAGTTGCACAATTGCATCAGCAAATAAGACCGTAA
- Protein Sequence
- MENVEYDFSKICRVCKSESADMQSVFAAEDGDGQSPRIDEMLMACSAVLVSLGDGMPDLICRACTLQLNSAYAFKKQCESTDSSLREYLDMQANETVKEEPQHPVCGEVDVLNHVLSDTDVIIDAIVDCAASQHDSQLNNLAEMKMETEPKEEMYEENISNSDFIQFLDNTQILLTCRTCLKCFTTLDGLKCHKRLHTGNLFKCKDCGKQYTRQNHLYRHEMTHSRRKVHVCKICNKTLTRFEHLKRHLITHLKDKPFSCTTCNRGFNRSEHLANHIKRCKGDRVHICNICNKGFNREDSLEVHKRLHDNKMPVLPTLENLDNIDEHYVEIEYEANENDSTLPFSDSDSETGDVTDCLEPQVDIAENTEPVKLSEITDIDSVPFSTTGNEQYAEIDAHELLDNKNIVEEELTEQDNSSQFEVKEEEESNSEDSDYLPTKPVVKVKRKRGRPRKHAIPSRTGRPRGRPPLQKIKAEPADEHSNEVEGEYPCPACDKVFTKMNLLEKHAFKHEGLKIHPCTVCNKKFSRSNHLKRHMLSHSTQKPFSCEICTKSFNRRDHLMQHMKLHVREQDYECEICKRTFGRANHLAKHKAAKHNIGEKIMGEKKYQCSVCLKGFTTEKYRDVHMKGHMGEKKYQCRTCDKTFLSKSHLTEHIKFHSENSKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCQYCGKGFPRTTDLTVHERYHTGEKTHLCTICGRGFGRAYNLTVHMRTHTGEKPYQCTYCEAAFAQGNDLKAHVRRHTGERFQCDHCSESFLMGYLLTQHKRTVHGLNVVSNIRRLQPVLKRQPDDSDDQQPITIPLPTPVVPTSVFNAQLQAQLAVAQLHQQIRP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -