Sper009426.1
Basic Information
- Insect
- Sinelater perroti
- Gene Symbol
- -
- Assembly
- GCA_036346155.1
- Location
- JARFIY010000020.1:146434-152723[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 1.5 4.3e+02 3.9 3.5 4 23 128 151 126 151 0.85 2 21 0.0036 1 12.2 1.0 1 23 171 194 171 194 0.95 3 21 0.013 3.7 10.4 2.3 1 20 199 218 199 222 0.89 4 21 0.0011 0.31 13.8 0.1 1 23 256 278 256 278 0.98 5 21 0.00013 0.038 16.7 0.4 1 23 284 307 284 307 0.97 6 21 3.7e-05 0.011 18.4 2.4 2 23 319 340 318 340 0.97 7 21 4.3e-05 0.012 18.2 1.6 3 23 348 368 347 368 0.98 8 21 1.8e-06 0.00051 22.6 0.5 1 23 374 396 374 396 0.97 9 21 3.5e-06 0.001 21.7 1.2 1 23 402 424 402 424 0.98 10 21 0.0059 1.7 11.5 0.0 1 21 430 450 430 451 0.94 11 21 0.00023 0.066 15.9 1.3 3 23 497 518 495 518 0.94 12 21 0.22 63 6.5 0.0 1 23 538 560 538 560 0.95 13 21 1.2 3.4e+02 4.2 5.4 1 20 564 583 564 586 0.86 14 21 0.027 7.8 9.4 0.8 1 23 592 615 592 615 0.96 15 21 0.0083 2.4 11.0 0.5 1 19 621 639 621 643 0.88 16 21 0.00048 0.14 14.9 1.4 1 23 649 672 649 672 0.97 17 21 6.6e-07 0.00019 23.9 1.6 2 23 684 705 683 705 0.98 18 21 1.1e-05 0.003 20.1 1.0 3 23 720 740 718 740 0.95 19 21 2.7e-06 0.00076 22.0 0.7 1 23 746 768 746 768 0.97 20 21 1.1e-05 0.0033 20.0 0.7 1 23 774 796 774 796 0.98 21 21 0.062 18 8.3 0.2 1 21 802 822 802 823 0.95
Sequence Information
- Coding Sequence
- ATGTCGATTAGGTTGAAGTCAGGTAATTTGGAGGCTAGGTCGGTAGAATGTTCCTTTAGCTGCTCCTCGACGATTCGGGCTGTGCGAAAAGCGTCGCGCACCAAGAGGTTAGCGACCTCGTTGCCGACGGGCGACGTGTTAATTACAAAGGAAGAGAACTGGTGCGGCGATCTCTCGGAAATCGACGATATCCATATCGTGAAGCAGGAGGAACCGTTATGCGATTACGAGCCGGCGGGCGGCCCccagaagaaacagaggaaaaGGGGTGGCGCCAAATCGAAGCTCTCGGAAATGGGCTACAAGAACCCGTTCGTGTACACCAACCCTAGGCTCGTCGATAAGAGCGGCGACTCGAAGCAACCTGACGTGAGCAGCTGCAAGTGGACCTGCATCATCTGCAATGCGTGCTGCGCGGACAAGCAGAGCCTCATCGAGCACTATGAGCAGCACAAGAACGAGAAGGAAGGGCTGCTGCAGCGGGCGCGCGGCGCGGAGCTGCAGGAGTACTTCAAGTGCGTCATCTGTCTGCAAGAGTTCACCTCCTCGCGCAGCTACGAGAAGCACCTGGAGCTGAAGCACGGGGAGAACCGGCATACCTGCGAGCAGTGCGACAAGAACTACAAGAGCGCGTTCCAGCTGAGCCTCCACAACTTCAACGCGCATCCCAACGACGGGAGGTATAAGTGCATCGCCTGCGACTTCAAGTCTCTGTATCGGTCCACGTTGAAGTTCCACATGAAGAAGCACGAGCACGACCGCAAGTTCGAGTGCGACGTTTGCGATAAGAAGTTCCTCACGGCTGCGTGGCTGGAGGACCACAAAAACTCGCACTCGGGGGCGATGCCTTTCCAGTGTGAGATCTGCGCCAAGAGCTTTCCGTACTCCCGCTACTTGGTGGCCCACAAGCAGAGCTTACACCCTAACGTCTGTGCGGACGCGCCGTCGCCCACCAAGTGCGAGGTGTGCGACAAGCAGTTTGCGCACAAGAAGAGTCTGATTCTGCACCTGAAGTCGCATACTGGAGAGAACAGTATGCTGTGTGATATGTGCGGGAAAAGCCTGTCCAGTACCGAGCACCTAAAGCAGCACCTCCGGATTCATACGGGGTACAAGCCTCACGTGTGCGCCATCTGCGGGAAAGGCTTCGTGAAGAAGAGTAACCTGACGCTGCACGAGCGCGTCCACAGCGGTGAGAAGCCGTACGTGTGTAGGCGCTGTGGGAAAAGCTTCTCACAGCGCTCGACGCTCGTCATTCACGAACGGTACCATTCCGGAGAAAGACCGTACAGTTGTCCGTTGTGCAATAAAGGGTTCGTGGCGAAAGGTTTGCTGGGCGTCCACTTGAAAAGTTGTGAGAGGATTGTCTGGTATTTTGCGCAGCTGATTATTAAGGAAGAGGAGGTGGAGGACGATGACGAAGATTTCGACGAATACATTTACAAGATCGCCCCGCCCAAGAGGCGGCGGCAGAAGCGCACGTGGGCATGCAAGAAGTGCTCCGAAACCTTCAAGACGAACAAGCTGCTCAGAGAGCACCGGAAGGCGATGCACTCCAAGGAAGAGAACGACGCGAAGTACAATTACAGGCACGACGCGGCCAGAAATTCCTTCGTTTGTAACACGTGCGATGTGGAGGCGGACACCAAGGAAGAAATGGAGCAGCACGTCATCGAACACGAGGATAAATTCGAGTGCTACCTGTGCGGCAAGCAGTTCGTGAAGCCGTACGAATTCTGCTGCCACGTGTACGACCACGATAAGACAAAGGACTTCAAGTGTCCTTTCTGCAACTACTCGACTGCTAGGCGAACCGTCATAATGATGCACATCAACAGTTACCACCTGAGGAAGTACCTTTACAACTGCTCAAAGTGTGGCAAAGGCTTCAACGACAATATACTGTACAGCGAGCACGACAACGTGCACAAGGGCGTCAAACCTTTCGAATGCGTGGTGTGCCGCAAGGCGTTCTTCTTTTCGAGCTATCTCACCACGCATCAGATTCGCAACCACAAGGTGGCGATTGACGGTATAATCGGAATTAATCAGTGCTATGTGTGTGGCAAGAGCTTCAGCCGGAAGCAGACTTTGGAGAACCACATAAAGAGGCATGAGGCGAAACCCGCGAAGGTGGTGCACGAGAAGAAACACCTGTGCGACATTTGCGGGAAGGGATTCGCGCGGAACGAGAAGCTGACGATTCACTACAGGAACCACACAGGTGACAAGCCGTTCGCTTGCTCGTACTGCCCCAAGAGCTTCACCAAGAAGGACTACTTGATCATGCACGAGCGCGTGCACAGTGGAGAAAAGCCGTACTCCTGTGCCTATTGCGGGAAGTGCTTCAACCAGGGGGCGCCGCTGAGGATTCACATCCGTAGTCACACTGGGGAGAGGCCGTATGTCTGTCATATATGCAAGAACGGCTACGTGTCGAGGGGCGTTTTGAATTTGCACTTGAAGAATTGTGCAGGAAGCTATGACTAA
- Protein Sequence
- MSIRLKSGNLEARSVECSFSCSSTIRAVRKASRTKRLATSLPTGDVLITKEENWCGDLSEIDDIHIVKQEEPLCDYEPAGGPQKKQRKRGGAKSKLSEMGYKNPFVYTNPRLVDKSGDSKQPDVSSCKWTCIICNACCADKQSLIEHYEQHKNEKEGLLQRARGAELQEYFKCVICLQEFTSSRSYEKHLELKHGENRHTCEQCDKNYKSAFQLSLHNFNAHPNDGRYKCIACDFKSLYRSTLKFHMKKHEHDRKFECDVCDKKFLTAAWLEDHKNSHSGAMPFQCEICAKSFPYSRYLVAHKQSLHPNVCADAPSPTKCEVCDKQFAHKKSLILHLKSHTGENSMLCDMCGKSLSSTEHLKQHLRIHTGYKPHVCAICGKGFVKKSNLTLHERVHSGEKPYVCRRCGKSFSQRSTLVIHERYHSGERPYSCPLCNKGFVAKGLLGVHLKSCERIVWYFAQLIIKEEEVEDDDEDFDEYIYKIAPPKRRRQKRTWACKKCSETFKTNKLLREHRKAMHSKEENDAKYNYRHDAARNSFVCNTCDVEADTKEEMEQHVIEHEDKFECYLCGKQFVKPYEFCCHVYDHDKTKDFKCPFCNYSTARRTVIMMHINSYHLRKYLYNCSKCGKGFNDNILYSEHDNVHKGVKPFECVVCRKAFFFSSYLTTHQIRNHKVAIDGIIGINQCYVCGKSFSRKQTLENHIKRHEAKPAKVVHEKKHLCDICGKGFARNEKLTIHYRNHTGDKPFACSYCPKSFTKKDYLIMHERVHSGEKPYSCAYCGKCFNQGAPLRIHIRSHTGERPYVCHICKNGYVSRGVLNLHLKNCAGSYD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -