Sper041043.1
Basic Information
- Insect
- Sinelater perroti
- Gene Symbol
- ZNF236
- Assembly
- GCA_036346155.1
- Location
- JARFIY010000189.1:3414003-3437118[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.2e-05 0.0034 20.0 0.4 2 23 10 31 10 31 0.97 2 17 0.04 12 8.9 0.2 1 23 37 59 37 59 0.98 3 17 0.0019 0.54 13.1 1.6 2 23 74 95 73 95 0.96 4 17 1.1e-07 3.1e-05 26.4 0.6 1 23 294 316 294 316 0.99 5 17 0.00016 0.047 16.4 1.1 1 23 322 344 322 344 0.96 6 17 0.00054 0.15 14.8 1.9 1 23 350 372 350 372 0.99 7 17 0.013 3.8 10.4 0.1 1 23 380 402 380 402 0.97 8 17 8.7e-05 0.025 17.3 7.2 1 23 452 474 452 474 0.98 9 17 7e-05 0.02 17.6 3.5 1 23 480 502 480 502 0.98 10 17 2.4e-05 0.007 19.0 0.1 1 23 508 530 508 530 0.97 11 17 0.0028 0.79 12.5 3.1 1 23 536 558 536 558 0.97 12 17 1.3 3.6e+02 4.2 0.1 2 19 949 966 948 968 0.94 13 17 1.1e-05 0.0033 20.0 0.1 1 23 988 1010 988 1010 0.98 14 17 1.3e-07 3.8e-05 26.1 1.1 3 23 1021 1041 1020 1041 0.98 15 17 2.1e-07 5.9e-05 25.5 1.2 1 23 1047 1069 1047 1069 0.98 16 17 0.00021 0.061 16.0 0.9 1 23 1077 1099 1077 1099 0.98 17 17 0.00025 0.072 15.8 2.3 1 23 1105 1127 1105 1127 0.98
Sequence Information
- Coding Sequence
- ATGGCTCTGCACACGAAGGGGGAACCAACTTGCCCTATTTGTAAAAGGAAGTTTCAGAGGCAAGCCAGTTTGAAGGCGCACATTCTTATTCATCAGATGGAGGAAATTTTTACTTGCGTCGAGTGCCTTGCAGAGTATGAAAAAGAAGaagattataataaacatatggAGACgcataaaattaagaaacaagaGGGAACTTCAGAAAATTTACCGTTGGTTTGTACACTATGCAGTCACACCTTTCAAGATGCTTCAGAATATAAGCAACACATTTCACGTCATATTAAAATTAAAAGGTTAATGATGAATGggaaaaggaataaaaagagGGTAAATACCAATAAAGAACACCAGTACAAATTGGGGAGAAACCTTTTGCGTGTCATTTATGTACGCGCGCTTTCAATCAAAAAGGTACTTTGCAAATACATCTTGCTCGACACAAAGGACTCAAACCTTTTCAATGTACCTTATGCCCAGCCAAATTTTGCCAGAAAGgCAATTTGCGTGTCCACGTTCAAAAGACGCACGTTGCTCCTGCCCCAGGAGAAAAAGCATACAAGTGTACCATGTGcacttgcatttttaaaaaggtGTCCTCTCTTAACGCTCATATTACTAAAGGCTCATGCGGGAGAGAAGGATTCAGATGATATAACAGACGTAGTGCAACAGTTGAAGCAGTTGGAGAAGCAAATGGATCCTAAAGTCACAGAAGTTATATCTGATTCTAATGCAAAGCTAACTCTGTCCAAAGAAAATGCATTGGAGCTGGAGGTTAATTCGGATAAGTATGTGAAGTTAGCAGATTCCAGCGTTGATGGCACTATTAAGAGGTATTGGGCGAAGCAGAGAAAAGTTGGAGAAGTGTTGTGGTACGTCTGCACTTACTGTTCAAAGGAGTTTAAGAAACCTTCGGATCTTATTAGACATATACGTGTGCATACTCGGGAGAAGCCTTTTAAGtgtaaaCAGTGTGACCAAGCCTTTTCCTTGAAGTCAACCTTGATAACTCATAGCAGTGTGCACACAGTGAAGCGGCAGTTCAAGTGTGCGATTTGCCCAAAGACTTTCACTTGTGCTCGGACCTTGAATGGACACATTAGAAGACACGAAAAGCGCTCAACGCAACAGTACATGTGCAGTAGCTGCAATGCAGTTTTCAGTACATTAGCCAAAGCACAGATGCATATGGATGTACATTCTGTCAACAAGGGACTGAATAAGCTTGAAAAAATGCACATAGTCATGCAGCAGCCCATGCTAGAAACAGCTTCAGgtttattaccTGTAGCTACTCCAAAAGCACAAAACGATCTCTCTCAGCAAGAGCTAAGTAAAACGAAGCCCCACAAATGCCACTACTGCAATGCGTCCTTCACTAAAAGTGTTCATCTCAAACGTCACTTGCTGATTCATTCTGGGGAGAGGAAGTTTAAATGCAACTTATGTTCAAAATCATTCTATTTTTCATATGCTCTGAGAGAGCACATGAAGTTTCACAGTGGCGAGAGGAACTACAGATGCAAAATATGTGGCAAGGCATTTGTCACAAATGCAATCTTGAAGAGGCATGTAGCTATTCACTCTTCATTTAAGCCTTTTGTCTGTCCGTACTGTAAAAAACGCTTTAAGACTATTATTTTGTGTCGAAAGCATATTAATGTACATAAGAAGCAGTTGAGTCTTCAGATACATGCTCTTGATGAAACTGGAGAATTGGCGGCCATTGATGGTAGTAATGCAATGTCTACTATTGATTTGCAGGATGCGCTGAAAGAGCATCCCTTTTCATCTACATTAGTAGATGGCACGGCCAATTTAGAACTACCCTTGGACAATTTAGTAGAAGAAGCTGTTATGCCAGCAGAAATTAACTCGCCGCTGTTGCTCACCAAATCTAATTTAGATGCCAATAAGATGGTGCAAATTAATAAGGACAATTTAAcgtcaaaaatattatatactgATGAAAATGGCATAATTATATCTGCTGATTTGGATAGCCAAACACTTagcaAGGATGTCCAGTTGCAGAATTCCCTTACTCAGCCATTTTATCAGAGTGTGGAAGTTCCTCaaaattaccttgaaaagggtGTCAATCTAGCTTTAATGCCTGAGACATCACATGccaatgttttaaataatatggaAGATGCAGTTAGCGGTCTTTCACAAGATAATTTAGGAGAAGACAACTCATATCCTACAGTACTCATCAATTGTGATGATTTGCAAGCTCTCACGTCTGGTAATCTCTATAATGCTTGTCTTGCTCAGTTGAAGAATAATGACCCTTTGTTAATGAGTGGTTTGAATGAAATCCAGGATCCCAATGTTCTGTTATCTGCAGATCCCACATTAACTCCAATGTCTGATTTTCAACTGGATTCCCAGACCATTGAAATGCTCATGCCATTTACACTGAGTACAAATTTGAGtacaaatttatctttaaacaaCTTAGCTGTATCTAGTAATTcattaaacaacataaatacATCATTTCCTAACATCATACTCTCAAACATTGAAGATGAAAATGGTATAAATCAAACACTGGAGTTACCTAATGTAAACGAAATTGGTAAGAAATCAGACACATTTGGCAGCAAATTGTGCCAAACCAACAGTCTTCAAAATCTTGAAATAGACCAAAATGTTGTCATGAATTTAAATGAAGATCCATTGTCTATTCAGGAAGGGGCTATCCTGTCAAATCTCTTGTATAACAGCAATCAGTTAGAAGTTAATTCCAATATTATAGCAACTAGTAGTCAGCAAGAGTCTACAAGCGGCTTGCAGACTATAAATGATGTTTCGGAAGATATGAGCATGGTGTGCACTGCTTGTCAAGAGATGTTCAAATCCGTGCAAGACTATAAGAATCATGGTGACGATAATGAAAGTGCAGCAAAATCACCTACAACAGATAAACCTGACAAAACTGTGAAATATATTTGTCCTCAATGTGATAAAgctttaacaaacaaaaatgcgCTTTCACGTCATATTGCAACACATCAAGAAACTAAAAGCTCTTTGAGCAATGCTTGTACATATTGCAGTAAAACCTTCAAGAAGCCTTCTGACCTGGAAAGACACATTAGAACCCACACAGGGGAAAAACCATTTAGCTGTGAAATGTGCGGAAAAAGCTTTTCTCTCAAATCCACCCTCGAATCTCATTTACGGACTCATAACCCTTTAGGCAACAAAGACTTCAGCTGTGCTGTGTGCAGTTCCTATTTTAGTTCCAAGTCAAGTCTTCGAGTCCATATGTCAATGCACACAgGAGTTAAGCCATATCAGTGTTCATTATGTCCTGAGAAGTTTCGCACATCGGGTCATAGAAAGTCCCACATGGCTAACCATCTGAAAGCAGCTGAGAATAAAAAGCAATCACAATCTAAGACTTCAAAAGTGAATAGTCTTTTGGCATCTATAGTTATGGACACTCAGAATATTATACAGAATTCTAGGGAAAATGAACCGCAGATTATTGTGAGTATACaatga
- Protein Sequence
- MALHTKGEPTCPICKRKFQRQASLKAHILIHQMEEIFTCVECLAEYEKEEDYNKHMETHKIKKQEGTSENLPLVCTLCSHTFQDASEYKQHISRHIKIKRLMMNGKRNKKRVNTNKEHQYKLGRNLLRVIYVRALSIKKVLCKYILLDTKDSNLFNVPYAQPNFARKAICVSTFKRRTLLLPQEKKHTSVPCALAFLKRCPLLTLILLKAHAGEKDSDDITDVVQQLKQLEKQMDPKVTEVISDSNAKLTLSKENALELEVNSDKYVKLADSSVDGTIKRYWAKQRKVGEVLWYVCTYCSKEFKKPSDLIRHIRVHTREKPFKCKQCDQAFSLKSTLITHSSVHTVKRQFKCAICPKTFTCARTLNGHIRRHEKRSTQQYMCSSCNAVFSTLAKAQMHMDVHSVNKGLNKLEKMHIVMQQPMLETASGLLPVATPKAQNDLSQQELSKTKPHKCHYCNASFTKSVHLKRHLLIHSGERKFKCNLCSKSFYFSYALREHMKFHSGERNYRCKICGKAFVTNAILKRHVAIHSSFKPFVCPYCKKRFKTIILCRKHINVHKKQLSLQIHALDETGELAAIDGSNAMSTIDLQDALKEHPFSSTLVDGTANLELPLDNLVEEAVMPAEINSPLLLTKSNLDANKMVQINKDNLTSKILYTDENGIIISADLDSQTLSKDVQLQNSLTQPFYQSVEVPQNYLEKGVNLALMPETSHANVLNNMEDAVSGLSQDNLGEDNSYPTVLINCDDLQALTSGNLYNACLAQLKNNDPLLMSGLNEIQDPNVLLSADPTLTPMSDFQLDSQTIEMLMPFTLSTNLSTNLSLNNLAVSSNSLNNINTSFPNIILSNIEDENGINQTLELPNVNEIGKKSDTFGSKLCQTNSLQNLEIDQNVVMNLNEDPLSIQEGAILSNLLYNSNQLEVNSNIIATSSQQESTSGLQTINDVSEDMSMVCTACQEMFKSVQDYKNHGDDNESAAKSPTTDKPDKTVKYICPQCDKALTNKNALSRHIATHQETKSSLSNACTYCSKTFKKPSDLERHIRTHTGEKPFSCEMCGKSFSLKSTLESHLRTHNPLGNKDFSCAVCSSYFSSKSSLRVHMSMHTGVKPYQCSLCPEKFRTSGHRKSHMANHLKAAENKKQSQSKTSKVNSLLASIVMDTQNIIQNSRENEPQIIVSIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -