Sper009419.1
Basic Information
- Insect
- Sinelater perroti
- Gene Symbol
- Zfp42
- Assembly
- GCA_036346155.1
- Location
- JARFIY010000020.1:116646-122089[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.081 23 7.9 0.0 1 23 75 97 75 97 0.97 2 21 0.77 2.2e+02 4.8 3.3 1 19 101 119 101 123 0.83 3 21 0.0022 0.64 12.8 2.4 1 23 129 152 129 152 0.97 4 21 0.0033 0.94 12.3 3.1 1 23 158 180 158 180 0.97 5 21 0.00035 0.1 15.4 0.3 1 23 186 209 186 209 0.95 6 21 6e-05 0.017 17.8 0.3 2 23 221 242 221 242 0.97 7 21 3.2e-05 0.0092 18.6 0.7 3 23 256 276 254 276 0.96 8 21 1.4e-06 0.00041 22.9 1.3 1 23 282 304 282 304 0.98 9 21 6.8e-06 0.0019 20.7 0.7 1 23 310 332 310 332 0.98 10 21 0.012 3.4 10.5 0.2 1 21 338 358 338 359 0.95 11 21 0.00035 0.1 15.3 1.4 2 23 411 432 410 432 0.94 12 21 0.18 52 6.8 0.0 1 23 452 474 452 474 0.97 13 21 0.018 5.2 10.0 1.8 1 23 478 500 478 500 0.93 14 21 0.0082 2.3 11.1 1.5 1 23 506 529 506 529 0.97 15 21 0.0044 1.2 11.9 2.3 1 19 535 553 535 557 0.90 16 21 2.5e-05 0.0072 19.0 2.5 1 23 563 586 563 586 0.97 17 21 4.1e-06 0.0012 21.4 1.5 2 23 598 619 597 619 0.98 18 21 8.4e-05 0.024 17.3 0.8 3 23 633 653 631 653 0.96 19 21 0.00013 0.038 16.7 1.3 1 23 659 681 659 681 0.98 20 21 1.1e-06 0.0003 23.3 2.2 1 23 687 709 687 709 0.99 21 21 0.009 2.6 10.9 0.2 1 20 715 734 715 736 0.94
Sequence Information
- Coding Sequence
- ATGGTTCTAGTATTTAATGAAAGGGTTGTCATCGTGGAGGTGAAAGTCGAGCCTTGCGATAGCCCTCCCTACGCCCAAGAGCAAGGAAACGGAAGCTTGTGGCCAAACAATGACTCGCAGTCGACTACTGCACCAAGGCTGCGGAAAAGGCGCAGAAGAGTCTTCCCCAAGTACGATGCGTACTCACAGTACAGCTATCGCTTCGAGGACAAGCGCAAGGTGTTCGTTTGCAACACTTGCGATTTGGAATTGGCCAGCAAGAGCGCGGCGGAAGAGCACGTGTTGGTGCACGAGGACAAGTACGCGTGCGAGACTTGCAAGAAGGTGTTTTTCAAGCCTTACGAGTTCAGCTGCCACGTTTACGGCCATGACAAGTCGAAAGGCTTTCATTGTCCGTTATGCAAGTACTCCACCCCCAGGCGGACCACTCTGTTGTCGCACATCAGCACGTACCACTTGCGCAAATACATCTACACGTGCACAAAGTGCGGTAAGGGGTTCAACGACTGCGTCCGATACAAAGAGCACAACAATGTGCACGAGGGCCTCAAGCCCTTCCGATGTGTCGTTTGCGGCAAGGAGTTCGCTTTCTCGAGCTACCTCGTCGGTCACCAGGTCCGCTACCACAGAGTTACCATAGACGGGACTATCGCGGTCAACGAGTGCCCCCTGTGCAAGAAGGTGTTCAGCAAGGTCACCGCGCTGGGGAAGCACATGAAGGTGCACGAAAATAGAGAGAAGGGCGCGCGAGAGAAGAAGCATCTCTGCGACGTGTGTGGGAAGGGTTTTGTGACGACGGAGAAGCTGCGGGTACACTACAGGGTGCACACGGGCGACAAGCCCTACACCTGCTCATACTGCCCCAAGAGTTTCACCAAGAAGGACTACCTCGTCATGCACGAGCGCGTGCACAGTGGTGAGAAGCCCTACTCCTGCGAGTATTGCGGGAAGTGCTTCAGCCAGGGGGCTCCGCTGAGAATCCATCTGCGGGGGCACACTGGGGAGAGGCCATACATTTGTCACATCTGCAGAACCGGCTTTATATCCAGGGGCGTGCTCAATCTCCACTTAAAAAATTGCCCTGAATGGTACGGGTTCCCGATGCAGGAATGTCCAGAGGCTCTTCTTGGAACGTACACTTCAATGGGATTGGGCATGAAGCTGCCAATAAAAAGAAAGTCGAACGATGAGGACTTCCCTAAGAGGCACCGGCGCACTAAACGCCTGTGGTCGTGCAAGAGGTGCAAGGAAACGTTTGCGACGTCCACGCTCCTCAGGAAGCACCGCTCGGCTCATAGGAAGCAAGAGACCGACTCCCAGTACAACTACCGGTTTGATGACAAACGCGATCTGTTCGTTTGCGGCACCTGCGACCTGGAAACGGCGGACAAGCGCGAGATGGACCAGCACGTGCTGGTGCATGAGGACAAGTTTGCTTGCAGGATCTGCGGCAAGGAATTCGTGAAGCCGTACGAGTACAGCTGCCACATGTACAACCACGACCAGGCGGAGGGCTTTCCCTGCCCGCTGTGCAATTTTTCCGCTTGCAGGCGGACTAACATATTGACGCACATCAATACCTATCACTTAGGGAAGTATCTGTACACCTGCACCAAGTGCGGCAAAGGTTTTAACGACTGCGTGATGTATAAGGAGCACGACAACGTACACCAAGGCATCAAGCCGTTCCGCTGCGTTGTCTGCAGCAAGTCTTTTACGTTTTCCAGCTATCTGACCACCCACCAGATCCGTTATCACCGGGTGATCATAGACGGCACGATCGGGGTGAACCAGTGCCCGGTTTGCCGCAAGAGCTTCAGTAGGGGCAACACGCTGGAGAAGCACATGAAGCGCCACCAAAGTGAGGAGAACGTGGTCCGAGAGAAAAAGCACCTCTGCGACGTGTGCGGGAAGGATTTCACGGCTAGTGAGAAGTTGCGTGTGCACTATAGGGTGCACACGGGGGTCAAGCCGTTCACTTGCTCCTATTGCGCCAAGAGCTTTACCATGCGCCAGTACCTAATAATGCATGAGCGGGTGCACAGTGGCGAGAAGCCGTACTCTTGCGAGCACTGCGGGAAGTGCTTTAACCAAGCGGCCCCTCTGAGGATCCATGTGCGTACCCACACCGGAGAGAGGCCTTACGTTTGCCACATCTGCAAGGCGGGTTTCGTCTCCAAAGGCGTCCTGAAAATCCATTTTCAGAACTGCCCTGGTATCCATAATTAG
- Protein Sequence
- MVLVFNERVVIVEVKVEPCDSPPYAQEQGNGSLWPNNDSQSTTAPRLRKRRRRVFPKYDAYSQYSYRFEDKRKVFVCNTCDLELASKSAAEEHVLVHEDKYACETCKKVFFKPYEFSCHVYGHDKSKGFHCPLCKYSTPRRTTLLSHISTYHLRKYIYTCTKCGKGFNDCVRYKEHNNVHEGLKPFRCVVCGKEFAFSSYLVGHQVRYHRVTIDGTIAVNECPLCKKVFSKVTALGKHMKVHENREKGAREKKHLCDVCGKGFVTTEKLRVHYRVHTGDKPYTCSYCPKSFTKKDYLVMHERVHSGEKPYSCEYCGKCFSQGAPLRIHLRGHTGERPYICHICRTGFISRGVLNLHLKNCPEWYGFPMQECPEALLGTYTSMGLGMKLPIKRKSNDEDFPKRHRRTKRLWSCKRCKETFATSTLLRKHRSAHRKQETDSQYNYRFDDKRDLFVCGTCDLETADKREMDQHVLVHEDKFACRICGKEFVKPYEYSCHMYNHDQAEGFPCPLCNFSACRRTNILTHINTYHLGKYLYTCTKCGKGFNDCVMYKEHDNVHQGIKPFRCVVCSKSFTFSSYLTTHQIRYHRVIIDGTIGVNQCPVCRKSFSRGNTLEKHMKRHQSEENVVREKKHLCDVCGKDFTASEKLRVHYRVHTGVKPFTCSYCAKSFTMRQYLIMHERVHSGEKPYSCEHCGKCFNQAAPLRIHVRTHTGERPYVCHICKAGFVSKGVLKIHFQNCPGIHN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -