Sper014363.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sinelater perroti
Gene Symbol
-
Assembly
GCA_036346155.1
Location
JARFIY010000043.1:880822-883565[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 1.7 4.9e+02 3.8 1.3 1 23 316 338 316 338 0.82
2 18 1.2e-05 0.0036 19.9 3.6 1 23 344 366 344 366 0.98
3 18 4.8e-05 0.014 18.1 2.0 1 23 372 394 372 394 0.99
4 18 5.2e-05 0.015 18.0 0.7 1 23 400 422 400 422 0.98
5 18 6.9e-06 0.002 20.7 1.2 1 23 428 450 428 450 0.99
6 18 9.3e-06 0.0027 20.3 0.2 1 23 456 478 456 478 0.99
7 18 4.5e-06 0.0013 21.3 2.0 1 23 484 506 484 506 0.99
8 18 8.2e-05 0.023 17.3 1.2 1 23 512 534 512 534 0.99
9 18 5.8e-05 0.017 17.8 1.1 1 23 540 562 540 562 0.98
10 18 1.6e-05 0.0046 19.6 1.0 1 23 568 590 568 590 0.98
11 18 2.9e-06 0.00084 21.9 3.1 1 23 596 618 596 618 0.99
12 18 2.5e-05 0.0071 19.0 0.1 1 23 624 646 624 646 0.99
13 18 1.5e-05 0.0044 19.6 3.9 1 23 652 674 652 674 0.98
14 18 0.00016 0.047 16.4 0.4 1 23 680 702 680 702 0.99
15 18 1.8e-06 0.0005 22.6 3.2 1 23 708 730 708 730 0.99
16 18 2.2e-05 0.0062 19.2 0.2 1 23 736 758 736 758 0.99
17 18 1.5e-05 0.0043 19.7 2.9 1 23 764 786 764 786 0.99
18 18 0.088 25 7.8 3.2 1 23 792 814 792 814 0.98

Sequence Information

Coding Sequence
ATGGAGGCGGACGCGCGCGATAGCGCGCGAGGGGTGTGCCGCACGTGCTTGCGGTGCATCGACGGCGGCTCGCCTGCGTTTAATGTAGACGCGGCCGAACCCAGCGCCGAGGTGACGCTGCGCCACAAGCTGCGGGACTGCGTGCCCGAACTGAACCTGAGCATCACGCCGAACGCGGTCATTTGCAGCGCCTGCTCGGCGGAGGTAGACTCGGCCCACCGGTTCAAGAGGAAATGTCTGGAGACCGAGCAAAACATCAATAGCTATGTGGAGAAGATGGGCTGTGCCCCCAGCCACATCGACCTGCTGCACGTGCTGCAGCAGCAGCAAGCTGCAGATACCGATAACGATGCCCACCTGGTACAAATAAAACAGGAGCCGATAACGAACTACCCAGTTCTAGGTACGATAAAGCAAGAAATTATTGATACAGATGATGATTGCAACAATGCTAATGATGAAATGGGGTTTTATGATGACCATTGCGATAATGATCAAGAATTTGCTCAGTTGTCGCATGTTAAGCAGGAACGTTTTAATGAAGGATATGGATGCGAAAATGCACCGAGTACACTGCAGTTTCCAAACGAAACCGACCAGTCTATGAATGGAACAGTTGAAGCCATCGACTATTCAATGGACGCATCAAAGAAGCGGGCAGAGCAAGAAAAGGACAGCGAAAACGGTGCAAATTTGATGGAATCCATGAAAGTAGACGTAAGTGAGCTGAATATGTCGTTTCAAAATCTCCTTCCACCAGAGCATTTAAATTTACGACCAAACGACATGAATTTTAACCCGGCTGGTTTTATAGGAGCCTCGAATATTAAAAGCGAATTTGGGGATGCCACCACGCCTCAGCCAGAAGCACAGCCCAGTGGTTCTGGCGATGTTCCTTCCCTCgatatacagaaatatttacGAACAATCATGGGCAAGCCTATACACGAGTGCAATATTTGCGGCTACAAGACTGCACTAAAGAGACGCATTCTCCTGCATAAGAAGCTTCACACAGAAAATAAGCTGCACAAGTGTACTCAGTGCGAGTATGTTTGTGCCCAAAGGAGCAACTTAAATGTGCATATGCGCATACATACAGGGTATAAGCCATATAAATGCAACCAGTGCGAGTACTGCACCACGTCCAACTCTGCCCTGATCGTACACACTCGAATACACACAGGGGAAAAGCCTTACTCCTGCAATGTGTGCGGCCACAGCACCATTTCCAAGTCGGCCTTAACTGTACATTCAAGAATTCACACCGGAAGCAAACCCTATCGTTGCACCATATGCGCGTACCGTACCATCACCAAATCGTCACTTACCGTTCACATGCGCACTCACACAGGAGATAGGCCTTATAAATGCACCATTTGCCCATACAGCACCACAGCAAAATCTGCTCTGAACGTCCACATTCGAATACATCAAGGCTACAAGCCATTCCAATGTCCGCTCTGTCAGTATCGCTGCACCCAACGTAGCGGACTCAACGTACACATGAGGATCCACTCGGGGGATAAGCCGTACAAATGCACCGAGTGCGAGTACAAGAGCAGCAGTAAAAGTAGTCTTGTAGTGCATAAACGTATCCACACTGGCGAAACCCCATATCATTGCACTATCTGCAGTTACAGCACGTCTGCAAAGTCTGCTTTAAACGTGCACATGAGGATCCATGGGGAAAATAAGCCGTTCATTTGCGTGTTGTGTGGTTACAAATGTGCACAGCGTAGCGGCCTTACTGTGCACATGCGGACACACACAGGCGACAAGCCTTATCAGTGTTCACAGTGCGATTACAAATGCAGCTATCAAGGAAATTTGAAAGTGCATATGCGCGTGCATACGGGCGAAACGCCGTTCCAGTGTTACGTTTGCGGCTACAGTACGACTGCCAAATCTGCTCTGGTAGTGCATATGCGGATTCACACCGGTGAGAAGCCATATAATTGCACTGAGTGTTCATACAAGTGCAGCACCCGCAGCAGCTTGAAAGTTCACATGCGTGTGCACACCGGGGAGACCCCTTACGAGTGCAGCAGGTGTGACTACAGAACGACCGCCAACTCGGCTCTGGTGGTACACATGCGAAAGCACACCGGCGAGAAACCGTACAAATGCACGGAGTGTCCCTACAAGTGCAGCAGCAGGAGCAGCTTGAAGGTTCACATGCGCATCCACACTGGCGAAACGCCGTTCAAGTGTACCGTATGCGATTACAGCACCACTGCCAATTCAGCCTTAGTAGTCCACATGCGTATCCACACAGGGGACAAACCCTACCAGTGCGCCGACTGCTCCTACAGGTGCAACAACAAGAGCAGCCTGCGGGTCCACATGAAGGTTCACATGGGGCGCACGCCTTACACCTGCGCCATATGTTCCTATCGCTGTAAGAAGGGCTTCATCCTGAAGCGGCACATGCGTGTTCACATGGCAGATCTGAAGCTCGACGGCGAGGTTTTGGAAACCACGCCGCTCAGCAACCCTATCGTAATCGAATCGGAAAGCGAAAATGAAGACGAGCAGGAGGAAAGCACGGTCTCCACAGAAATGGAATCGACCAGTGAGGTGGCAGAAGCAGAATTGAATGACACAACGAAATCGGACGGCAACCACGCAGAAGCAGAGGTGAATGTTGGGCCGGTAGAAGCGCAAGCATCTAATAACACAGTTCTCTCCTAA
Protein Sequence
MEADARDSARGVCRTCLRCIDGGSPAFNVDAAEPSAEVTLRHKLRDCVPELNLSITPNAVICSACSAEVDSAHRFKRKCLETEQNINSYVEKMGCAPSHIDLLHVLQQQQAADTDNDAHLVQIKQEPITNYPVLGTIKQEIIDTDDDCNNANDEMGFYDDHCDNDQEFAQLSHVKQERFNEGYGCENAPSTLQFPNETDQSMNGTVEAIDYSMDASKKRAEQEKDSENGANLMESMKVDVSELNMSFQNLLPPEHLNLRPNDMNFNPAGFIGASNIKSEFGDATTPQPEAQPSGSGDVPSLDIQKYLRTIMGKPIHECNICGYKTALKRRILLHKKLHTENKLHKCTQCEYVCAQRSNLNVHMRIHTGYKPYKCNQCEYCTTSNSALIVHTRIHTGEKPYSCNVCGHSTISKSALTVHSRIHTGSKPYRCTICAYRTITKSSLTVHMRTHTGDRPYKCTICPYSTTAKSALNVHIRIHQGYKPFQCPLCQYRCTQRSGLNVHMRIHSGDKPYKCTECEYKSSSKSSLVVHKRIHTGETPYHCTICSYSTSAKSALNVHMRIHGENKPFICVLCGYKCAQRSGLTVHMRTHTGDKPYQCSQCDYKCSYQGNLKVHMRVHTGETPFQCYVCGYSTTAKSALVVHMRIHTGEKPYNCTECSYKCSTRSSLKVHMRVHTGETPYECSRCDYRTTANSALVVHMRKHTGEKPYKCTECPYKCSSRSSLKVHMRIHTGETPFKCTVCDYSTTANSALVVHMRIHTGDKPYQCADCSYRCNNKSSLRVHMKVHMGRTPYTCAICSYRCKKGFILKRHMRVHMADLKLDGEVLETTPLSNPIVIESESENEDEQEESTVSTEMESTSEVAEAELNDTTKSDGNHAEAEVNVGPVEAQASNNTVLS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-