Sper016683.1
Basic Information
- Insect
- Sinelater perroti
- Gene Symbol
- -
- Assembly
- GCA_036346155.1
- Location
- JARFIY010000046.1:33004882-33007611[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.8e-09 1e-05 27.4 0.0 2 40 16 54 15 56 0.94 2 2 2.5 5.5e+03 -0.5 0.0 4 15 130 141 127 143 0.80
Sequence Information
- Coding Sequence
- atggttcaaAATTATCAACGCAAAACCCAAAAAGTCGTTTATACAACTGAGGACTTACAAAGGAACATAAAACATGTTAAGTCTGGAAAATGTGGTACATTGCGTGCTAGCAAACTATTCAATATCCCTAGAAGTACATTAAAGGACCACATCAAAGGTCGTAGAGTTATCAAGAGTGACACAATGGGAAGACCTACAGCGTTACCAGCCAAAGATGAAGAGGTTCTTGCAAAAGGAATCAAATGCCTCGAAAAATGGGGGTTTGGGCTTAGCCGTAAAGAAATCCTAGATATTGTAGGCAAGTATGTTAGGCAGAAACAGCTCAAAACTCCATTCAAGAACAAAGTACATGGAGAAGACTGGttcctaaattttaaaagaagacataatttatttaaagcctTAGAATATGTCCGTAAGAAAAACACGGACCCCATTTATAATATACCcccagaagGAACTTTCACCATCAGCGAACGCTTGCGCTCACCCACAGTCAAGTGCTTCGCGGCAAATCAGGGCGTACTTGTGCTACCCTCAGCCAAGTCAGCCCTGAAACCGACCAGGGGACGCTCGCGCGCACCACAGCCGAGTTCCTCGGTCAAACAGGCCGTCATCCCGGCCAGAAGATTCCACCAGAGAATCACCTCCACCCAAGGCTCTTCGGAACGCGCTGAGGAAGGCTCTCCGTCTCTCGCCACTTCCGAAGCACGCATCACCGCTTCCGCCGTCGCCCTAGAAAAGGCTAGCCAGAGGACGTCCGCAGACGAAAACAAGATCCCTTCGGAAGGCGCTCCAATTCCCTTCGCCAAGAAGCAACGTCCATTCTTCCAGGTCTGGCCTCGCCCGATAGAAGTCAGAGGCACCTACATCGGCATCGACCCGCTCCAAGTCGTTCTCGCAGACCCCAGGAGATTCGCCGGGAACGAACTCATACAACCGCCGAGAGAAATTGACGTTGATTTGTTGCAACAGATAGGTCAGGAAGAACGTACACCAGTAGAATATTTTGGATTGTTGGACTTAGAAGATGGTCGGCAAAGTACACAATTAGCTGAAGATGTTGGATTGTTGGAAAGGGAAGAATGCGAGGGAAAACATAAAGAGACACCAGCTAAAATGACAGACACGTTTGAAGCACTTTTACTGAATCTCGTAAAAGGAAATCAAGCTGATAGTGTAACGAAAAAGTCCAGGAAGAGAATATGTTCAGGTGCTGAATTAATGCAAGCGAGGGCGTAA
- Protein Sequence
- MVQNYQRKTQKVVYTTEDLQRNIKHVKSGKCGTLRASKLFNIPRSTLKDHIKGRRVIKSDTMGRPTALPAKDEEVLAKGIKCLEKWGFGLSRKEILDIVGKYVRQKQLKTPFKNKVHGEDWFLNFKRRHNLFKALEYVRKKNTDPIYNIPPEGTFTISERLRSPTVKCFAANQGVLVLPSAKSALKPTRGRSRAPQPSSSVKQAVIPARRFHQRITSTQGSSERAEEGSPSLATSEARITASAVALEKASQRTSADENKIPSEGAPIPFAKKQRPFFQVWPRPIEVRGTYIGIDPLQVVLADPRRFAGNELIQPPREIDVDLLQQIGQEERTPVEYFGLLDLEDGRQSTQLAEDVGLLEREECEGKHKETPAKMTDTFEALLLNLVKGNQADSVTKKSRKRICSGAELMQARA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -