Sper066531.1
Basic Information
- Insect
- Sinelater perroti
- Gene Symbol
- -
- Assembly
- GCA_036346155.1
- Location
- JARFIY010000316.1:367669-369650[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3e-10 6.5e-07 31.2 0.0 2 40 16 54 15 59 0.91 2 2 8.9 1.9e+04 -2.3 0.1 8 16 194 202 193 211 0.78
Sequence Information
- Coding Sequence
- atggttCGAAACTATCAACGCAAATTCCAAAAAGCCGCTTATACAACTGAGGACTTACAAAGGGCCATAGAACATGTAAAGTCTGGAAAATGTGGCACATTGCGTGTTAGCAAACTATTCAATATCCCTAGAAGTACATTAAAGGAGCACATCAAAGATCGTAGAACTATCAAGAGTAATACAATGGCCAAAGATGAAAAGATTCTTCCAAAAGGAATCAAATGCCTCGAAAAATGGGGGTTTGGGCTTAGCCGTAAAGAAATCCTAGATATTGTAGGCAAGTATGTTACACAGAAACAGCTCAAAACTCCATTCAAGGGCAATGTACCTGGAGAAGACTGGttcctaaattttaaaagaagacaTAATTTGTCAATCAAAAAACCTGACACCTTGGAATATGCCAGGAAGAAAAACACGGAAGCCTTTATAATATACTCGTATTTTGAGTTATTGAAAGATACGATACAAAAAAGTCGTAGAAGAAAAGGGGAGTTCCTCTACTCGAATTGTATCTGGTCCAGGGAGGACAAATACCAGTGTTCTGTTTGCTGCTGCTGCAAATGGACAAAAATCTCCGCcattaattatatacaaaagaaaaaAGCCGCTTTCACATGGGCTGCTGTGGAAGATATTTCAGAAGTGGAGCCTTCGGATGTCATTTGTACTTTACCTCCTCCTACCATcggaaaaagaaatgaaatcaAGTTTGACGTCAGTTTTTCTGGTTATAACATCAATTAA
- Protein Sequence
- MVRNYQRKFQKAAYTTEDLQRAIEHVKSGKCGTLRVSKLFNIPRSTLKEHIKDRRTIKSNTMAKDEKILPKGIKCLEKWGFGLSRKEILDIVGKYVTQKQLKTPFKGNVPGEDWFLNFKRRHNLSIKKPDTLEYARKKNTEAFIIYSYFELLKDTIQKSRRRKGEFLYSNCIWSREDKYQCSVCCCCKWTKISAINYIQKKKAAFTWAAVEDISEVEPSDVICTLPPPTIGKRNEIKFDVSFSGYNIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -