Sper025625.1
Basic Information
- Insect
- Sinelater perroti
- Gene Symbol
- -
- Assembly
- GCA_036346155.1
- Location
- JARFIY010000099.1:15817364-15819932[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.3e-12 1.6e-08 36.4 0.0 1 39 291 330 291 334 0.90 2 4 6.4e-13 1.4e-09 39.8 0.1 1 39 345 383 345 387 0.95 3 4 3.5e-17 7.6e-14 53.4 0.0 1 45 400 445 400 445 0.97 4 4 7.4e-14 1.6e-10 42.8 0.1 1 34 452 485 452 488 0.95
Sequence Information
- Coding Sequence
- ATGCCGGTGTTTCGCGTCTCCCACAAACCCCGGTATAATCTGGGGTTGCTTGGCGAGCGGCTCCAGGGCACGCACTGGGGGAAAGTGATGCGGCGTCTGGACCAATCAATACTGTCGCTCCTAAAAACTGCAGATCAGCTGAAAATAAAGGGACTCTGCGAGTCAGAGGAGAAGGAAAATTCTATTCCTTCCCTTTTGCGCCTAAGAAGGGCTCGCAGAGAGTTTGATCAGGACAACCTTTCTGATAGAGAAGAGAACGACCAAGATAATGTAGTGCGGGAAAATCCGTCCGATGATGACAGCGACGGGGCGTTAGTTGTTGATGAGGGACCAAAGAGAAAAAAACTGACGCAGGCGCACAATAAACCGCTTAACATGAGCAGTCATGGCCTTTTGGCTGGACAGGCTCTATTCTCTCAGTTGTGTGATAACGATGACTTTCCGCCGGAGCCACCGGCTCCTACGGCGACACCCGTTGGTCACGTGGACCTTCAAGAACACTCCCCTACCCGAAATATGCTGCAGTCATCCCACAGAACAGATTTATCAGatgtacatataaaatatgaggatataaagaaggaaaccacaattaaatttgaaacattGAGATCTTACGATCATGATTCCATGATGGATATGGATGCAACCCACATGTCTGGTGCCGATCACTCCATGGAAAGCCACGAGGATGCAGAACGAGCCATGCACTCCATGATGGTCACTCCCGAACTTATGGGCATGATGCCTGGTGGATCTGGACGATTAGTTTTCTCAGATCCATCGAACGGCGATAACACCCAAATCAAGAGCAACGGCCATTCAGATCACATGGGGACGCGGTCGCACGGCGGGGGCCCCAAAACCTGGACGCAGGAAGACATGGAACTTGCTTTGGATGCCTTAAGAAACCACAACATGAGCCTTACAAAAGCCTCGGCCACCTACGGAATTCCCTCCACGACTCTATGGCAAAGAGCGCATAGGTTAGGTATAGATACGCCCAAAAAGGAAGGGCCTACGAAGTCATGGACCGAAGAGAATCTAAATTCTGCTCTAGAGGCTTTAAGAACAGGCACTATATCCGCTAATAAAGCTAGCAAAGCTTATGGAATACCTAGCAGCACCTTATACAAAATAGCGAGAAGAGAAGGTATAAAGTTAGCGGCACCTTTTAACGCAGCACCGACCACGTGGTCGCCTGAAGACTTAGAAAAAGCATTGGAATCCATAAGGTCCGGTCAGTCATCCGTGCAGAAAGCATCTACAGAGTTTGGCATTCCTACTGGGACGCTATATGGCAGATGCAAGAGGGAGGGAATTGAATTGTCGCGATCAAACCCTACGCCATGGTCAGAAGATGCAATGGGCGAGGCTTTAGAAGCTGTAAGACTGGGTCACATGTCGATAAATCAAGCCGCAATTCACTACAACTTGCCCTATTCATCCCTCCAGTCACAGTCCGACCAGCAGGTGCTCGTCATGGACTACCCCAATTCTCACCAACAAATCCAGTACCAGCACCATGCGAACAGCTGA
- Protein Sequence
- MPVFRVSHKPRYNLGLLGERLQGTHWGKVMRRLDQSILSLLKTADQLKIKGLCESEEKENSIPSLLRLRRARREFDQDNLSDREENDQDNVVRENPSDDDSDGALVVDEGPKRKKLTQAHNKPLNMSSHGLLAGQALFSQLCDNDDFPPEPPAPTATPVGHVDLQEHSPTRNMLQSSHRTDLSDVHIKYEDIKKETTIKFETLRSYDHDSMMDMDATHMSGADHSMESHEDAERAMHSMMVTPELMGMMPGGSGRLVFSDPSNGDNTQIKSNGHSDHMGTRSHGGGPKTWTQEDMELALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNSALEALRTGTISANKASKAYGIPSSTLYKIARREGIKLAAPFNAAPTTWSPEDLEKALESIRSGQSSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLQSQSDQQVLVMDYPNSHQQIQYQHHANS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00003877;
- 90% Identity
- -
- 80% Identity
- -