Suni017322.1
Basic Information
- Insect
- Silvanus unidentatus
- Gene Symbol
- L
- Assembly
- GCA_963930825.1
- Location
- OZ005763.1:2360919-2365859[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0022 0.21 12.3 1.1 1 23 73 95 73 95 0.97 2 17 0.14 14 6.6 5.4 1 23 101 123 101 123 0.97 3 17 2.6e-06 0.00025 21.5 4.3 1 23 129 151 129 151 0.99 4 17 2.5e-05 0.0025 18.4 0.3 1 23 157 179 157 179 0.98 5 17 0.00056 0.056 14.1 1.3 2 23 202 224 201 224 0.95 6 17 1.1 1.1e+02 3.7 0.6 3 23 254 275 252 275 0.90 7 17 0.0067 0.66 10.7 0.6 1 23 297 320 297 320 0.96 8 17 0.63 63 4.5 0.6 3 23 408 428 407 428 0.94 9 17 0.02 2 9.2 8.7 1 23 437 460 437 460 0.92 10 17 0.0017 0.16 12.6 1.7 1 23 465 488 465 488 0.96 11 17 8 7.9e+02 1.0 2.8 1 23 495 519 495 519 0.92 12 17 0.041 4 8.3 4.2 1 23 553 576 553 576 0.87 13 17 0.086 8.5 7.3 6.1 2 23 630 651 629 652 0.94 14 17 0.00038 0.038 14.6 0.6 1 23 660 682 660 682 0.97 15 17 0.0038 0.38 11.5 4.0 2 23 815 836 815 836 0.96 16 17 0.00056 0.055 14.1 0.1 1 23 844 866 844 866 0.97 17 17 0.052 5.1 7.9 2.1 1 23 873 895 873 895 0.97
Sequence Information
- Coding Sequence
- atgaaaatgttatttaaagGAAATAGCAGTCGTCTAGAATTATTAATTGAGAAAATTCAATCAACACGAGAGACAACAGACGTTAAAGAAATTGATTCAATACCGGGCTCATCGAAAGATCAAAACAACCCCGGACCATCGCAAATACCCGACAATCTTACATCAGAAACGGAAGATTGTAGTGTACAAATAGACGATTTCAATGATGATACCTCGTTCTCTTGCACAATTTGCAATGAGCACTTTTCCAAAGGGAAAGatctattagaacatgaaCAAATACATTCAGACCATTTACAGTTCACATGCTTGTATTGTCCGAgattatttaaacataaaaGATCGAGGGACAGACACACGAAATTGCATACAGGCGATAAGAAGTACAAGTGTGTACATTGCGAATCGGCATTTTCACGAAGTGACCATTTAAAAATCCATATGAGGACACACGATGGCAGAAAACCGTATAAATGTAACATATGTAATAGAGGGTATAATACAGCAACTGCATTAGCATCTCATCAGCAGAATCATTTGAAAAAAGAATGTAAATCAGATAGTCCAACAAGTGAAGATACCACAGATTCGCCGGATTTAATTCGATGTCATTTCTGTACGAGTACATTTAATAGACTTGAACAATTGCAGAATCACATTATAATCGAGCACAGTAACACGAATTCCCCGACAGGAAGTCAATCGTCGTCTGATCACATTAATTCCGATAGTCAAATCTACGATGATTTAAAAACAGTATGTATTTATTGTTCGAAAGAATTCCATACGATTGATTCAATGTATGAACATATAAATGAAATGCATAATAAGAAATCGAATAATGATTTATTCGAACCGAAATTAGAAAAGAATGAAAATGATTCGTTATTTCCATGCGATCGATGTGCAATGGAATTTGATAAATTAGATAATTTAAAAGAGCACATTTGTAATGAACATTGGCGTCCGATTATATTCAATACAAAAGAACAGAATATACCATTCGATTTGTCGAATGCACAAGATTTAAGTAAAAAGAAGAAGTATGAAGATAATGATGAGAATAAATTAATGAAACGACATAAAACAAATCACACATTCGATACGAATGAGAAACCCTTCATATGTTCTTGCTGTTATGTGCAATTACCGAATTTTAAGAGTTTCTTACTACACATGGAAACGCATATGGCAAGTTCGAGTAATTTATTTGTGGGATTTTGTGTATTTTGTGGTGAATCGAATCGTGATCAAATTTCTTTCACAAATCATATGTTTGGCCACGTTATTTCCCAATTACCAGAACATTATTGCTGTTGTATATGCGAGAAGACGTTCGATCATTGTGACAAATTACAAAAACACTTAATTGATGAACATGTTTTAACTGTATACAAATGTAACATGTGCAGCGAAACGTTCGATACGAAATTATTGATGAAGTTACacttaaataataaacattcaaACGAATGCCAACACTTCAAATGCCATTTGTGTACCGATCAAGTGTTTCATAATAAATTATCAGCGGAAATTCATATATCTATGAAACATTACCATCAATTCGCTTCATGTGTATTAAGTAATCAATCCATGATGGATAAAGTCCATCAAGACGATTTTGAAACAAATACAAAACTCTATGGTATCCTGTTCAACTGTAATTATTGCACGAAATCGTTTAAAGATCAATTCTCCCATTATATGCATTTGATTAAAGAGCACAACAATAAAGAACAACAGGCCACAAAGGCGTCTTCGCCTCCGTTAAAGACAGTCTATCAAAACGTGACAACGAACAGTACGGAAAATTCAAATGATCCATGCATTTTGAGTACAACACAAGAGAAAATACAGAAAACAACCAAAGGCTCCCTAAGTCTGCAGTGTGCGTATTGTTACGAGTATTGCAAGTCGAAACACGACCTCCAAATACATGTGAAGAATCATCATGTTAATTGCGgcaaaataaaacataaatgcaATATATGCGATGAAATTTATACGTCCGCAATGAGTTTGGCCGATCATAAATTGAAACATTGTAAAATTGTTGACggtaataattgtatacaATGCAAATCGATATTAACTGACGAACAAACATTCTATACCCACCAAATAAAGCACAGTAACGGtttggtaaaaacgaattcgCAAATATTATTGCCTGCAATATGTATAATATGCAGTCAAACATTACAAACTGATATTGAGATTAAATTGCATGCCAAGTTCCATTTGAAGCATCTATTGGAGAAGGATTTctattgtaaaaattgcaaGAAGAAAATTTATGAGAAACATAGTGAGAATGTACAGAATTTATGTAAAGAATGTAATAGTAAAAGTGTGGAAACGGAAAAATTGTCTAAATATACatgtgtgaaatatttgaAAGAGGATGAACGGAATTCAATGCAGGATAGTAATGAGAATGAGTGCCATTTgtgtaaacaatttttctgTTCATCTGATAAATTGCAAATACATTTAATTGAGCATAATTTTTATGGTATTAATGAGTACAGTTGTTATGTTTGTTCGTCGGTGTTCACTGGTGCTAGTGGCTTACAAAATCACATGTTAGAGCATAATTTAGATACGAAACCGTATGAATGTGGCAATTGTCATATGAATTTTTTCTTTAGAGCTGAATTAGACAATCATCGATTTGTACATACAATAAACCAGTCAACAACAACGACAACAGCAACAATGAATTTGTTGAAAATTGAGAATAGAAGcgaatttgaatataaaacatgtaaatattgttcgaatttatatttaaataatggtTTTTTAGCGGACCATTTGCAACAATGTCCATATAAAATGAGTCCAAAACAAGAACAATGTGATTTAGACAATAACATTAGTAAAACAgataaaaacatatttaatgATGGAGATATCAAGCAGCAAATATAA
- Protein Sequence
- MKMLFKGNSSRLELLIEKIQSTRETTDVKEIDSIPGSSKDQNNPGPSQIPDNLTSETEDCSVQIDDFNDDTSFSCTICNEHFSKGKDLLEHEQIHSDHLQFTCLYCPRLFKHKRSRDRHTKLHTGDKKYKCVHCESAFSRSDHLKIHMRTHDGRKPYKCNICNRGYNTATALASHQQNHLKKECKSDSPTSEDTTDSPDLIRCHFCTSTFNRLEQLQNHIIIEHSNTNSPTGSQSSSDHINSDSQIYDDLKTVCIYCSKEFHTIDSMYEHINEMHNKKSNNDLFEPKLEKNENDSLFPCDRCAMEFDKLDNLKEHICNEHWRPIIFNTKEQNIPFDLSNAQDLSKKKKYEDNDENKLMKRHKTNHTFDTNEKPFICSCCYVQLPNFKSFLLHMETHMASSSNLFVGFCVFCGESNRDQISFTNHMFGHVISQLPEHYCCCICEKTFDHCDKLQKHLIDEHVLTVYKCNMCSETFDTKLLMKLHLNNKHSNECQHFKCHLCTDQVFHNKLSAEIHISMKHYHQFASCVLSNQSMMDKVHQDDFETNTKLYGILFNCNYCTKSFKDQFSHYMHLIKEHNNKEQQATKASSPPLKTVYQNVTTNSTENSNDPCILSTTQEKIQKTTKGSLSLQCAYCYEYCKSKHDLQIHVKNHHVNCGKIKHKCNICDEIYTSAMSLADHKLKHCKIVDGNNCIQCKSILTDEQTFYTHQIKHSNGLVKTNSQILLPAICIICSQTLQTDIEIKLHAKFHLKHLLEKDFYCKNCKKKIYEKHSENVQNLCKECNSKSVETEKLSKYTCVKYLKEDERNSMQDSNENECHLCKQFFCSSDKLQIHLIEHNFYGINEYSCYVCSSVFTGASGLQNHMLEHNLDTKPYECGNCHMNFFFRAELDNHRFVHTINQSTTTTTATMNLLKIENRSEFEYKTCKYCSNLYLNNGFLADHLQQCPYKMSPKQEQCDLDNNISKTDKNIFNDGDIKQQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -