Suni003460.1
Basic Information
- Insect
- Silvanus unidentatus
- Gene Symbol
- prdm10
- Assembly
- GCA_963930825.1
- Location
- OZ005757.1:25826712-25832333[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.006 0.59 10.9 0.1 2 23 416 437 415 437 0.96 2 12 0.0075 0.74 10.6 0.1 1 23 506 528 506 528 0.97 3 12 0.0074 0.73 10.6 0.7 1 23 546 569 546 569 0.93 4 12 1.8e-05 0.0018 18.8 0.4 2 23 588 609 587 609 0.97 5 12 0.1 9.9 7.0 4.4 2 23 618 639 617 639 0.96 6 12 0.016 1.5 9.6 0.8 1 23 646 668 646 668 0.97 7 12 6.9e-05 0.0068 17.0 3.1 1 23 674 697 674 697 0.97 8 12 0.00015 0.015 15.9 4.8 1 23 702 724 702 724 0.98 9 12 0.00052 0.051 14.2 4.5 1 23 730 753 730 753 0.89 10 12 0.0019 0.18 12.5 1.7 1 23 794 817 794 817 0.97 11 12 8.1e-07 8e-05 23.1 1.7 1 23 839 862 839 862 0.97 12 12 0.0024 0.24 12.1 2.1 3 23 910 931 908 931 0.96
Sequence Information
- Coding Sequence
- ATGGACACACTTACGAAACGTAATTTAAATGAAGATTGTACCGATCTGACAGAACAAACTCAATGGACCGATCAAACAAAGGAAACCCAACTTGATTTACAAAACAATCCAACACTGCTATACATTGAGGTGGAATACGTGAAAGATGGCACTGTTCTCTCGGAAACTCAAATGCCATTCAATAACTTGGACACTCACGTGAGCTCGCTAGATCCAAATATGAGTTCAGTGGCCCGTTATAGTCCCGTTTACAATCAGAATGAGCATCCAAACGAATTCACACCTGTAATACAATTAGTATCCCAACAAGAGGAATCACAATGTCCCGAAGAGACAGCCACATTGGAAACCATTTCAACTGTCTTAAACAGCAATACAACACAATACTTACACATGGTTGACAATGAAACCTTACGACCGGATTCCGAAGAGTTTCAATTAGTAAATAATGAGAAACATCAAAGACTTGAATTACTTATAACCGATCAAACAACTGGCATATCGTACAGTGTCAACACCCAAGACATACTTGTAGACGATGAACAGTTGTTAAGTGTATTAAATCCGGAACCGTTGCTGGACACAACTGATTTACTACAACAACTTGATGAGAGCACTTTAAAAGCGGAAATAAGCGATGAAATCTCACCGAATTTAGTACAAAATTACATCAATTGTGTGGAACATGAAGACACATACAAACACTTGAATGCGAATAATTTCAAAATGGAAAACAGAAGACAGAAAAGCGGCAATATTGATACTGAAGAGCAATTATTATCATGCGTCTATACAATCACTGATAAACCAGTTCCATCAAGAGCTAGAGCTACATTACCTGAATCTTATCTagcaattaacaaaataaacgATTCGTTTGGTGTTTTTGCGAAAAAAGCAATACCAATGCGCACCCAATTCGGTCCATTGGAAGGTGTGATTGAGGCGATTAATCGAAATGCAATCAATTCGAATTCCGATCAAATTCAATACGTATTTGAATTGGAGAATTTTTTATATCGTATCGATGTGAGCGACGAAACACAATCGAATTGGATGTGTTTTGTACGTAAAGCGGACACATACGAagaaatgaatttagttataAGTCAAGAAACTGACGGCCTATATTTCACAACAACCAAACAGATTTTACCGAAACACGAACTAAAAGTTGGTTACGGTTTATCCTATagtaaattatataatttaacaatattaGAACCGAAATTAGTGAAATCATGGCCGTGTTATGAATGCGATGAGAAATTTCTCAATTCAAATGAGTTACAATTGCATTTAAATGTACATGATAATGACAGGAAACCGAACATAAAAAGAAAACTACAATTACAAGTAAAGAACAAGAAACAAACAAGCGATATTTTAGAATGTAATCTTTGTAAGATATTATTTATGGATTATACGTATTTTACATTACGGAAACATTTAAGAGAACAACATCGTCTCATTGGTAACATAACAATCGATGAGAAGTATTCAATTGTTGCATGTTACAGATGCAATGTATGTGAATCGGCATACCGTTCGGACGCTTTATTACGTATTCATCAATTAGAGCATGGAAGTAACGATTGTAATAATGATACAGATGAGGAACAGCATATATTCAATCACATTTGTCCAGCATGTCAACGTAAATATCCAACACAACGACAATTAATCCTACATGTTCAACAGCAGCATACATTACCAAAGAAAATGAAGAAAATCAAACCGAGTGCAAATACGAATTGCATTAAATGTCCAGTTTGTTATAAGATGTTTGCGTTCCGTGATCGTTTGCAAAGGCACATGTTGGTGCATGGTTCGGATGATTTGAAGCCGTTGGAATGTAAGACGTGCAAGAAACGTTTCTTAAACAAATCAGCATTAACATGCCATGTAAAGACACATTATGTGGGTAAAAAAGTGTTTGAATGTCCGATTTGTTTGGAGACATTCGATCATgtattgaaattgaaattgcaTGTAACTAAACACTCACTGAACAATCAATACACTTGTCCACATTGTCAGAAAGTGTTCAAGAAGTACAGTGTGATAAGGAAACATATAAGAGCGTTCCATTGTGAGAGGAAACATAAATGTGAGCATTGCACCAAAATGTTTCCAACATTGGATAAATTACGTATGCATTTGTTAAGACATTCCGATCATCGTGAGTTTCTTTGTTCGGATTGTGGCAAGCAATTTAAACGTAAAGATAAATTAACGGAACATTGTAAACGGATGCATATGGGTGAGGAGTGTGAGAACACTGTACCATCCATACCGATTAAAAGTAACACGAACAATCATCAAGTGGCGAAGAAGTATGCACCGAAAACGTCAGCAACGGATTTTCATAGATTTATATACAAATGTCATACTTGTTTGGTGGGTTTCAAAAGGCGAGGAATGTTGGTGAATCATTTGGCCAAACGTCATCCTGACATCCAACCAGATTCCGTACCGGAATTGAATTTGCCTATTTTACAAACAATCCGTGATTATTATTGTCAATATTGTGATAAAGTGTATAAAAGCAGTTCGAAATTGAAGGCGCATATATTAAAGAATCATCCGGGTGCTGCATTGCCGATGAGTAATCGAACAATGAAACAACAGGACAAAGGGAATGGAAAGGATGTTAAACACGAACAACAAGCGACAAATCCGATTTTCTCACAAACTGTTGGCAGTATTACGACACGGCCACAAAATTGTAAATGGTGTTTTAAGCAGTATGCCAGTAAAGCGAAATTACTGCAACATCAACGTAAGAAACATGCTGAACAATTGCATAATTTAACGTTACAAAATAAGAATAGAAATCAAGAGaagaataaaattgttatgaATAATATAAAACAGGAAACGTTTCCAGAAAAGACACATAATATCGAAATGGAGGAGACATTGTTTACTAGTAGTAAAATTATTGATGATATGAGTTTAATTGATGATTTAAATGTGGTTGCTTTGAATGAAGAGAATGAAGTTGTTGGTGGTGGATTGAATGAGTTGATTGGTAATTCAAATTCGCATTTGTATCGTCTATTGACGACTGCAAGTAATGATATGTTGCCGCCACCACGTTGA
- Protein Sequence
- MDTLTKRNLNEDCTDLTEQTQWTDQTKETQLDLQNNPTLLYIEVEYVKDGTVLSETQMPFNNLDTHVSSLDPNMSSVARYSPVYNQNEHPNEFTPVIQLVSQQEESQCPEETATLETISTVLNSNTTQYLHMVDNETLRPDSEEFQLVNNEKHQRLELLITDQTTGISYSVNTQDILVDDEQLLSVLNPEPLLDTTDLLQQLDESTLKAEISDEISPNLVQNYINCVEHEDTYKHLNANNFKMENRRQKSGNIDTEEQLLSCVYTITDKPVPSRARATLPESYLAINKINDSFGVFAKKAIPMRTQFGPLEGVIEAINRNAINSNSDQIQYVFELENFLYRIDVSDETQSNWMCFVRKADTYEEMNLVISQETDGLYFTTTKQILPKHELKVGYGLSYSKLYNLTILEPKLVKSWPCYECDEKFLNSNELQLHLNVHDNDRKPNIKRKLQLQVKNKKQTSDILECNLCKILFMDYTYFTLRKHLREQHRLIGNITIDEKYSIVACYRCNVCESAYRSDALLRIHQLEHGSNDCNNDTDEEQHIFNHICPACQRKYPTQRQLILHVQQQHTLPKKMKKIKPSANTNCIKCPVCYKMFAFRDRLQRHMLVHGSDDLKPLECKTCKKRFLNKSALTCHVKTHYVGKKVFECPICLETFDHVLKLKLHVTKHSLNNQYTCPHCQKVFKKYSVIRKHIRAFHCERKHKCEHCTKMFPTLDKLRMHLLRHSDHREFLCSDCGKQFKRKDKLTEHCKRMHMGEECENTVPSIPIKSNTNNHQVAKKYAPKTSATDFHRFIYKCHTCLVGFKRRGMLVNHLAKRHPDIQPDSVPELNLPILQTIRDYYCQYCDKVYKSSSKLKAHILKNHPGAALPMSNRTMKQQDKGNGKDVKHEQQATNPIFSQTVGSITTRPQNCKWCFKQYASKAKLLQHQRKKHAEQLHNLTLQNKNRNQEKNKIVMNNIKQETFPEKTHNIEMEETLFTSSKIIDDMSLIDDLNVVALNEENEVVGGGLNELIGNSNSHLYRLLTTASNDMLPPPR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -