Basic Information

Insect: Silvanus unidentatus
Gene Symbol: -
Assembly: GCA_963930825.1
Location: OZ005761.1:14937775-14940110[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.013 1.3 9.9 1.1 1 23 8 30 8 30 0.98

2 14 0.37 37 5.3 0.1 2 23 68 91 67 91 0.95

3 14 3.7e-06 0.00037 21.0 0.1 1 21 98 118 98 119 0.95

4 14 0.0078 0.77 10.5 0.5 1 23 127 149 127 149 0.97

5 14 0.0023 0.23 12.2 0.3 1 23 155 177 155 177 0.97

6 14 0.00015 0.015 15.9 2.8 1 23 183 205 183 205 0.96

7 14 0.00087 0.086 13.5 3.9 1 23 211 233 211 233 0.99

8 14 0.0052 0.51 11.1 1.5 3 23 421 442 420 442 0.94

9 14 0.0053 0.52 11.1 1.1 1 21 451 471 451 472 0.94

10 14 0.015 1.5 9.6 0.5 1 21 506 526 506 527 0.94

11 14 0.00045 0.045 14.4 0.6 1 23 535 557 535 557 0.96

12 14 0.0093 0.92 10.3 3.2 1 23 563 585 563 585 0.95

13 14 0.0071 0.7 10.7 7.1 1 20 591 610 591 613 0.95

14 14 0.00012 0.012 16.3 3.2 1 23 619 641 619 641 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.013	1.3	9.9	1.1	1	23	8	30	8	30	0.98
2	14	0.37	37	5.3	0.1	2	23	68	91	67	91	0.95
3	14	3.7e-06	0.00037	21.0	0.1	1	21	98	118	98	119	0.95
4	14	0.0078	0.77	10.5	0.5	1	23	127	149	127	149	0.97
5	14	0.0023	0.23	12.2	0.3	1	23	155	177	155	177	0.97
6	14	0.00015	0.015	15.9	2.8	1	23	183	205	183	205	0.96
7	14	0.00087	0.086	13.5	3.9	1	23	211	233	211	233	0.99
8	14	0.0052	0.51	11.1	1.5	3	23	421	442	420	442	0.94
9	14	0.0053	0.52	11.1	1.1	1	21	451	471	451	472	0.94
10	14	0.015	1.5	9.6	0.5	1	21	506	526	506	527	0.94
11	14	0.00045	0.045	14.4	0.6	1	23	535	557	535	557	0.96
12	14	0.0093	0.92	10.3	3.2	1	23	563	585	563	585	0.95
13	14	0.0071	0.7	10.7	7.1	1	20	591	610	591	613	0.95
14	14	0.00012	0.012	16.3	3.2	1	23	619	641	619	641	0.98

Sequence Information

Coding Sequence: ATGAAAATAGAAAAGGAAAAGTTCCCATGTTCTTTCTGCAGTCGCATACTAACTTCCAAAACAATATTAGAAacccatatgaaaaaacatCGCATAAAATGTACGAAatgtgaaaatgtgctatTTAAAACATTTGCAGAGAAAAAGGAACACGATAAGATTTTGCATTCAAAAAATCTTAACCCGCAGAAACAGGGAAAGAGATGTAAATTATGCCCGGATAAAATATTCCCTTCCGATGAAGACTATTTTATACACATTCAGATTGAACATGATGGCAAGGAGGCGAATTACATTTGCAGCGACTGTGGAAAGCAATTTAGGGTGCAAGGGGATCTAACGCAGCATATTAAATCGAAATGTGGTACCATAAGACGATTTACCTGCAAGTTTTGCGGAATTAAATTGATGACTGCAGGTTCATTGTACAACCACGAATTGCGCCATAAGGGCGAACCGAAATTCATGTGCCGTTTTTGCgcaaaattattttatacagCTGGTCAACTGGAGGTCCATGAACGGATCCATACGAAAGATAAGGCCTTCGTGTGCGAAgTGTGTGGTAAAGGGTTTTGCCATCGACAAAGTTTATTAACTCACAGCAGCATCCACACCGGAATAAAGCCATATGTTTGTGAAAATTGCGGTCATTCATTCAGTTGCGTTGGAAATTTATTGAAACATCGTAAAACTCATGCAGACACTTGTGGACTCACGCCCTTAACTACAAATAGTGTTCGAAATCCGCAGACGAAAATCAAAGTTCTTATTAATACACCAGAATCGTCGAGATTAAAGACGTATTCgttgaaaattgaaaaaaagaTGAAACTAGAACAGCTAATACAAAAGAAGCAGCAAACTGAAGggtttaaaattgaaaaagtaAACAACAATTCGGATGAAGCAGAAAGGGAAGAAAAAAACGAAAGTGTTTGTAATGAGAATTTACAAGATGAAAAGTCTGTAAACTGTAATGATGAAGTTCTGACTAGTACGATAGAAATTAAATACGATCCTCTAAAAAGAGAACTCGAAGATGGGGTTGAAATAGAGCTAAAGTCTAAACAAGGGGAGATAGGGGAAGTGGTTCCGATTCAAAAAgatattaaaattgatttagaAAAATCGGATGTTATAAAGAAACCTAGAAAGAAAAGAGAAATTTCAGACAAACCTACTGTGAAACGTAATAGAGTGAAAGAAGTACAagaatttataataaaacgAGAACTAGAAAACGCAACTAAAGCAAACTGCCAATACTGTGATAAAGAGTATACAAGCTTCGCTTGTTTGTACAAACATGAGTTAATTGATCATGCAAATGATATAGAACGTATAACATATGATTGTAAATGGTGTGCAAAATCGTATTTTAGCAAAAAAGAACTAAAGGAGCATAAAAAATTATGTTCAGCTAAAGGGATGAAACGAATTTCCAAGCAGACCACATCTGTCTCTCATATAGAGGAAAAATATCCTTTGAGGACTCCGAGAAAAAAATCCACGTACATTTGCTATAAATGCGGTGTAGAATTCTGTGAAAAAGCGGCTATGATCAAACATACGCAACGGAAATGTGGAAAAGGGCCGCATTTCACATGTTCAGTTTGTAAAAAGGTGTTTCGTAGCATAAAAACCAGAAATGCGCACATTGTTGTACATACCAACTACAAGACGTTCGCTTGTCGCTTCTGCAATAAGAAATTTCGTAGGAAAAATGCGAAGAAAGTTCATGAGTCGTCACATACCGGCGGAAAACCCTACAAATGTCTATTCTGTTCGAAAACTTTTACACAAAAAACATCATTGTTCTCTCACTACAGCTGTCATATTGGATTAAAGCCCTATTGTTGTGAGTCGTGCGGATCGCGATTCTCTCGtttgaacaatttaattaaacatcgTCTTACccattataaaaaatgtggTAAATGGCTGAAAACAACTCATATCAAAAAGGAGTAA
Protein Sequence: MKIEKEKFPCSFCSRILTSKTILETHMKKHRIKCTKCENVLFKTFAEKKEHDKILHSKNLNPQKQGKRCKLCPDKIFPSDEDYFIHIQIEHDGKEANYICSDCGKQFRVQGDLTQHIKSKCGTIRRFTCKFCGIKLMTAGSLYNHELRHKGEPKFMCRFCAKLFYTAGQLEVHERIHTKDKAFVCEVCGKGFCHRQSLLTHSSIHTGIKPYVCENCGHSFSCVGNLLKHRKTHADTCGLTPLTTNSVRNPQTKIKVLINTPESSRLKTYSLKIEKKMKLEQLIQKKQQTEGFKIEKVNNNSDEAEREEKNESVCNENLQDEKSVNCNDEVLTSTIEIKYDPLKRELEDGVEIELKSKQGEIGEVVPIQKDIKIDLEKSDVIKKPRKKREISDKPTVKRNRVKEVQEFIIKRELENATKANCQYCDKEYTSFACLYKHELIDHANDIERITYDCKWCAKSYFSKKELKEHKKLCSAKGMKRISKQTTSVSHIEEKYPLRTPRKKSTYICYKCGVEFCEKAAMIKHTQRKCGKGPHFTCSVCKKVFRSIKTRNAHIVVHTNYKTFACRFCNKKFRRKNAKKVHESSHTGGKPYKCLFCSKTFTQKTSLFSHYSCHIGLKPYCCESCGSRFSRLNNLIKHRLTHYKKCGKWLKTTHIKKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -