Suni002609.1
Basic Information
- Insect
- Silvanus unidentatus
- Gene Symbol
- ZIPIC
- Assembly
- GCA_963930825.1
- Location
- OZ005757.1:7300262-7302964[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 4.9 4.9e+02 1.7 0.1 3 23 8 28 7 28 0.90 2 15 0.094 9.3 7.1 2.9 1 23 416 438 416 439 0.92 3 15 0.11 11 6.9 0.3 2 23 520 542 519 542 0.92 4 15 0.0098 0.97 10.2 1.9 1 23 550 572 550 572 0.98 5 15 0.00054 0.054 14.2 3.5 2 23 575 596 574 596 0.97 6 15 0.035 3.4 8.5 3.0 1 23 602 624 602 624 0.89 7 15 4.4e-05 0.0044 17.6 4.8 2 23 631 652 630 653 0.95 8 15 0.029 2.9 8.7 1.1 5 23 666 684 665 684 0.96 9 15 8.9e-06 0.00088 19.8 3.7 2 23 690 712 689 712 0.96 10 15 0.008 0.79 10.5 0.1 2 23 728 748 727 748 0.96 11 15 7.2e-06 0.00071 20.1 0.9 1 20 754 773 754 776 0.92 12 15 0.00015 0.015 15.9 0.1 1 23 784 806 784 806 0.97 13 15 9.8e-05 0.0097 16.5 3.3 1 23 812 834 812 834 0.97 14 15 2.9e-06 0.00029 21.3 4.1 1 23 840 862 840 862 0.98 15 15 0.00072 0.072 13.8 7.4 1 23 868 890 868 891 0.95
Sequence Information
- Coding Sequence
- ATGAACAGTGCAAACCCAATTTGCCCAGTATGTACACTGTACCTACGGCCAGGGATCACATTAAAACAGCATTTAGCCAGCCATCCTAAGCAAAAAGTCATCGAAGCATTAGTACGTCTCGCTGGCACTGATGGAGATGTCATCAAATTGGACGATTCCGATTCCCCGACCACACCTGAGCCCTCACCATCGACCAGCACCGACCCAATTGTCACCACTCAAACTTGGAACACCCAAAACCCCACACCGTCTTCATTAACATCCATTCAAGGCAATCACGTGTACATTTACCAACAATGCATGAGCACCACTGCCCCCCCGAACCAAAACGTCCTCAATATCAACCCTCTCTCACCCCAGTACGTCATACCGACGGTATTCAACCCTCAAATGATGCCGTACGTTTATCAACAGCAGCAAGTGATTATGGCGAGCAATTGTCCAACTGGTCTTCGACCACTTCCCTTTCAAATGCCTCAAAATGAACCTGCACCAATACTAGACATCACCGAAACGTCTGAACAAGTGAAAGAAATCGAAGAACCCAAAGAAGAGGACGAGGAATCAAAGAAAACACCCGAAATTGAAGTGAAAGACGCTCCCTTACCGCAAGAACAGTGCGAAAACGACGCGCAACCACCAGAAGCCCAACCTGAACCCGCGTCCAATTGGAATTTAGAATTGAAATCATGCCAAACACAAACCACAACCACTGAATCACCAGTTGAGGATATCGAATACTCCGAAGATCGTCCAGAGTATTTCTATGTGAACGAAGACGCTGAAATCGGTTACACCAACTCGAACATCCTTCAACCAGTCAGTGAACAGCAACAGGAAATGGACATGATGGAAATGGAGAATATGCATGCAATCTTAATTAAGGATTTAAGTTCGAATCAGATTATAGCCGAGGAGAATTCTCGGCCGGCTGTTTTAATGACCATTGGAGACGTGAGTGAACGGCATATTGAGGACAGCACGTCTAGAGGCAGTTTAAATGTCAATATACGAACGGATGAGTGTATGCCGGCCAGAGGCGAACTGTCTGGCCAAGAGAGCATCGGTGGGTCCAGTGACATTAACTGGAATCGAGTGCAATCGAATGAAGGCAGCTCCGGATTAGGAGGATCGCACGATTTGCTCGCTTGGAACGAATGCGATACGTCCGATTCCGAGGATTTACCATCGAATAGTCAAATGATTGTCAAAGCAGACGTACATCCATCCGCAACAAGTTTACAATACAAATGCGCGTCTTGCGATGAAACGTTCAGTAATTGCATCGAACGCAGAGACCACGAATTAGAACACCATCCAGAAAAAACAGAATCCATGAGTTCCGGCATCGGTTCACAATTCGGTAAGAAAAAAGTCAAGAAACTAACCATAAAACCGAAAAGTGTTGACACAGAAAAACCGGAAACTTCCGAATTGTTTGTGTTTGGAAAAAATTTGAAGatggaaaatttaaaaacggaACAAACAGAAAACCCGAACGCCATCAATACTGTTGAGCCCGTTTTAAACGAAGACGGTCCAATTGAATTGAAAACCGTCTGTCCAATCTGTGATTGTATGATGGCGAATGCGCGTGCTTTAAAGTTACATCAATTCCAAGTGCACAAAATCAGTAAAGAAATCCGCCATAAATGCGGTATTTGCAGTGAAGGCTTCCAATACGAGTACAAATACACGCAACATCTCCAAATCCATCCGTTGGAGTGTCGTATGTGTGGTAAACAGTTCCATCGTCGTCAGAACATGGATTTACACATGCGACGACATTTGGGCGTGCGACCGTACAAATGCGATTTATGCAATAAAGCGTTTGTCACCAAACAGAAGCACGACGAGCATCGAAATAGTCACACGGGCGAAGCGCCGATAAAATGCGATATGTGCGAAGAAACATTTCGAAGACACTCGAATCTAGTGCAGCATCGCAACCGGCATCATTTAAATCTTAAGAAAACAGTCAAAGATTACGTTTGTGTTTGCGGCGAAGTGTTCCATTCGAAAAAGAAATTAGCCTGGCATAAAGAGACGCACGATAGAAAACCGAAATCGTGCACACAATGCACAGAGAAATTCGTACATAGTTCAAGTCTAACCAGACATATGCGACGGGCACATAATCAGAGCTATTTACCAAACAAAGATCGATCGAATGAGAATGTGCCCTGTCCGATTTGTAAGGGAACGTATCTACGATCATCTCTCGAAGCGCATATTAAAACACACAGCGGTGAACGGCCGTACGCTTGTGAGATTTGCAATAAAAGTTTCACAACCAAATGGAATTTGAAGTTGCATAAATGGACGCATGCATCGCGTGCATCCAAACCGTACAAATGTGACCAATGCAAAGCGGCTTTTATAAGGGAATCGGATTATACGGCGCATGTGAATGCACATAAAAGTGTACGGCCGTATACGTGTAATTATTGTGGTGAAAAGTTTATAAGGAAATCGAATTGTGTGCGACATGTGAAAGAGCACGAGAATGAAAAGACGTTCAATTGTGAGATATGCAATAAAACGTTTCATCGGTCGTATTATTTGAAGGATCACATGAAAGTGCATAGTGGTGAACGGCCGTTCTCTTGTCACATATGCGGCAAAACATCGTCAACCAAATCGAATCATAATAAACATCTGCAAATCCATCATGCAAGAGAACAAGTGAATACTGAGAATTGA
- Protein Sequence
- MNSANPICPVCTLYLRPGITLKQHLASHPKQKVIEALVRLAGTDGDVIKLDDSDSPTTPEPSPSTSTDPIVTTQTWNTQNPTPSSLTSIQGNHVYIYQQCMSTTAPPNQNVLNINPLSPQYVIPTVFNPQMMPYVYQQQQVIMASNCPTGLRPLPFQMPQNEPAPILDITETSEQVKEIEEPKEEDEESKKTPEIEVKDAPLPQEQCENDAQPPEAQPEPASNWNLELKSCQTQTTTTESPVEDIEYSEDRPEYFYVNEDAEIGYTNSNILQPVSEQQQEMDMMEMENMHAILIKDLSSNQIIAEENSRPAVLMTIGDVSERHIEDSTSRGSLNVNIRTDECMPARGELSGQESIGGSSDINWNRVQSNEGSSGLGGSHDLLAWNECDTSDSEDLPSNSQMIVKADVHPSATSLQYKCASCDETFSNCIERRDHELEHHPEKTESMSSGIGSQFGKKKVKKLTIKPKSVDTEKPETSELFVFGKNLKMENLKTEQTENPNAINTVEPVLNEDGPIELKTVCPICDCMMANARALKLHQFQVHKISKEIRHKCGICSEGFQYEYKYTQHLQIHPLECRMCGKQFHRRQNMDLHMRRHLGVRPYKCDLCNKAFVTKQKHDEHRNSHTGEAPIKCDMCEETFRRHSNLVQHRNRHHLNLKKTVKDYVCVCGEVFHSKKKLAWHKETHDRKPKSCTQCTEKFVHSSSLTRHMRRAHNQSYLPNKDRSNENVPCPICKGTYLRSSLEAHIKTHSGERPYACEICNKSFTTKWNLKLHKWTHASRASKPYKCDQCKAAFIRESDYTAHVNAHKSVRPYTCNYCGEKFIRKSNCVRHVKEHENEKTFNCEICNKTFHRSYYLKDHMKVHSGERPFSCHICGKTSSTKSNHNKHLQIHHAREQVNTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -