Suni007225.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Silvanus unidentatus
Gene Symbol
ham
Assembly
GCA_963930825.1
Location
OZ005758.1:25015263-25032793[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 0.11 11 6.9 1.0 2 23 271 293 270 293 0.89
2 9 0.00027 0.026 15.1 2.3 1 23 300 323 300 323 0.96
3 9 4.8e-07 4.7e-05 23.8 2.0 1 23 329 352 329 352 0.97
4 9 1e-06 0.0001 22.7 1.7 1 23 358 380 358 380 0.95
5 9 2.6e-05 0.0025 18.3 5.0 1 23 386 408 386 408 0.99
6 9 0.00051 0.05 14.3 0.7 2 21 416 435 415 436 0.95
7 9 8.7e-09 8.7e-07 29.2 0.7 1 23 759 781 759 781 0.98
8 9 1.1e-06 0.00011 22.6 1.6 1 23 787 810 787 810 0.97
9 9 8.9e-06 0.00088 19.8 3.4 1 23 816 838 816 838 0.99

Sequence Information

Coding Sequence
ATGAGAAACGGCTGCGAAGATAGACAGGATAAGAAGTGGCAGGAAATGGGACTGTCAGAGGCCGGAAGAGGTGCGGAACTCGCTGTTCTAAGGAAGAGACGCGTGCCAGGCGGATTCGTATCCTCCGAAGGCAGTGAAGATGTGATTGAAGTGAGTTCGGACCATTTCGAGGACAAGTCCATTGATAAAACGACCAACAACAATACCATCACACCGGAAAGTGCGAATATTTTACAAGAAACCATCAGTAATCCGAAATTAACGGTGAAGACTGCCGAAGAGCTGTTTGAACGCGCTTCAGAGACGTATTCGGATTCCAAGTACGCGGAGGCACGTGAAATGGTGCTGGCTATGGCGGTCTTACCGACCGAATTGGAAGTACGCGAGATTGGAGTGTTTGCCAGAGAGAATCTTGGCAAAGGGACGCGATATGGACCGTTTCAGGGCAAATGGGCTGGTCTGCCCGATGATCATCGTTTCGCTTGGGAGGTTGTCGCTGGAAGCGATGTTAGAGGATGGCTGGATGGGTCTGGGGAGCATCAAAATTGGCTGAAACTAATCAAAAGCAATCCGAATAAAGGAGGCGCAAATATTCGCCATTATTTGCAAGGGGGACAGTTATGGTACGAGACGTCGACGGAAATCGCAGCCGGGACCGAATTGGTGCTGGGCAAACGTGAACCCCTCAACTTGCAGGACATGTTCGGGGATTCCACATCGGCGGACGAACGTTCTGATCGAGAGACAGCCTCCCAACATAGTGGCACTGTTGATGAACGTGAAGAGGACGAGGAGGAAGAGTCCGAGGTGCGATGTTGCGTGTGCGATCATCCATTCACCGATGTAGATAAATTAGACGACCATTTGGTGGAGCAGCACAACTACCGTCGTGACGAATACCGTTGCGATTTGTGTCCAAAAGCTTATTCGCATCGTCCGTGTCTCATCAAGCACCGTTCGGTGGTGCATGGTGAACATAAAAAGTACCACTGTGAAAACTGTCCCAGGTATTTCACTGATCCGAGCAATCTACAACGGCATATACGGAACACTCACGTCGGTGCCCGTTCCCATGCCTGTCCAGAGTGTGGAAAAACGTTTGCAACGTCATCTGGTCTTAAACAGCACACCCACATTCATTCGTCGGTGAAACCGTTCCAGTGTGAAGTTTGCTTCAAGgCTTACACACAATTTTCCAACCTTTGCCGTCATAAACGTATGCACGCCGATTGCCGTATGCAAATCAAGTGCGTCAAGTGTGGCCAGTCATTCTCGACGGTTACATCGCTATCGAAACATAAACGCTTTTGTGATTCCACAACACCAACACCATCTACCACACCACAATTGTTATTGAATCCGATGGCCGGGAATAACCCGTTTTCCGCCATGTACAGGCCACCGACTTGTTCGTTCCCCATCTTCCCGCCACAGATGTCACCGTACAGTCACATGTTCCCAAATGCCCCAACAACACCATTTTTAAGTCCGCTGTTATTTAGTCCATTGGCTAAACTTGAAGAGCCACAACggaagaaattgaaaattgaTAGTCCTGAGATTAAAGAGCGAGTAACGCCACCTAGAGTGATGCCAGTACAAACAAAACTAACTCCACCGACCGATTTTAGTCCTTTAACAAAGCTGAAATGTGAAGAATCGCCAATGAAGAAGGAACGAATGACTCCGCCGCGAATTACGCAAGTACAAGCGAAAGTGAGTCCGCCAACAGGGGAAGAGGCGCATTTGACACCGTCACCAGCGAGACCTCACCATATGAAACTCGAAGAAGAGCCGAAAGACTTGTCGAAGAATGAGAAACGGAAGAGAAATCGTTCGGAGAGCAGTGATGAAGATCAACCGTTGGATTTGAGTGTTGGATGGAGGAAATCGACGTTTCCTgcaccaccgccaccaccgCCTCCAACACAAATTCGTGAAGAACCATGTGAGAAAGTGGAAGAGAAAATCGATGTGGTGGAAGTGGAGGAGGAGCCAAAGACACCGGTGGATAAAGTGCCCCAAATGGCGTACCCCCGTCCCATTCATCCGATGATGTTGGCGGAAGTGTATCGTTCGAATTTACATCATTATCAAACACAACAGAATGACCGTCTGCTGCCACTGCCATTCACGAATCGATTCCCATTTTTGGGTTCTTTGCCACCACAGAGGAATTTCGATCTTTTGCGGACGAATTTGCCGAATTTCAATGGTGTTAAACCGTACCACGACGTCATCCAACATCAGAACCAAGGAAAAATGAAGGACAGATATGCATGTAAATTTTGCGGTAAAGTGTTCCCGCGTTCAGCAAACTTGACGCGCCATCTACGAACACATACCGGCGAACAGCCATACAAATGCCGTTACTGTGAACGGAGCTTTAGCATTTCAAGTAATTTACAACGGCATGTGAGGAATATTCATAATAAAGAGAAGCCGTTCAAATGTCCATTGTGTGAACGTTGTTTTGGCCAACAGACGAACCTCGACCGTCACTTGAAGAAGCACGAATCGGATGACGGAACGGGCGGTGTGGCGGTGGCCGATTCGCCTGGTAGCAGTAACGAGAATGAGAGGGAGGATGCGTGTTTTGATGAAATACGCAATTTTATGGGAAAAGTGGCGTATGGCGGGCAGGAGTACTACAATCAGACGCGACTTTATACACCGCCAACGAATCATGATATCGTCGATGTGGTCGGGGGGAAGGAGGACGACGATTCGGAGACGTTTTCCGAGCCGGCTGAGGATTTTTCCACATCGAGTGCATTAAGGACGATCAAACAGGAAAAGGAGACGGTTTTGAACAACAACGACCAGACAATAGAGATTTCGACTTAG
Protein Sequence
MRNGCEDRQDKKWQEMGLSEAGRGAELAVLRKRRVPGGFVSSEGSEDVIEVSSDHFEDKSIDKTTNNNTITPESANILQETISNPKLTVKTAEELFERASETYSDSKYAEAREMVLAMAVLPTELEVREIGVFARENLGKGTRYGPFQGKWAGLPDDHRFAWEVVAGSDVRGWLDGSGEHQNWLKLIKSNPNKGGANIRHYLQGGQLWYETSTEIAAGTELVLGKREPLNLQDMFGDSTSADERSDRETASQHSGTVDEREEDEEEESEVRCCVCDHPFTDVDKLDDHLVEQHNYRRDEYRCDLCPKAYSHRPCLIKHRSVVHGEHKKYHCENCPRYFTDPSNLQRHIRNTHVGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCEVCFKAYTQFSNLCRHKRMHADCRMQIKCVKCGQSFSTVTSLSKHKRFCDSTTPTPSTTPQLLLNPMAGNNPFSAMYRPPTCSFPIFPPQMSPYSHMFPNAPTTPFLSPLLFSPLAKLEEPQRKKLKIDSPEIKERVTPPRVMPVQTKLTPPTDFSPLTKLKCEESPMKKERMTPPRITQVQAKVSPPTGEEAHLTPSPARPHHMKLEEEPKDLSKNEKRKRNRSESSDEDQPLDLSVGWRKSTFPAPPPPPPPTQIREEPCEKVEEKIDVVEVEEEPKTPVDKVPQMAYPRPIHPMMLAEVYRSNLHHYQTQQNDRLLPLPFTNRFPFLGSLPPQRNFDLLRTNLPNFNGVKPYHDVIQHQNQGKMKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCRYCERSFSISSNLQRHVRNIHNKEKPFKCPLCERCFGQQTNLDRHLKKHESDDGTGGVAVADSPGSSNENEREDACFDEIRNFMGKVAYGGQEYYNQTRLYTPPTNHDIVDVVGGKEDDDSETFSEPAEDFSTSSALRTIKQEKETVLNNNDQTIEIST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
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80% Identity
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