Suni007349.1
Basic Information
- Insect
- Silvanus unidentatus
- Gene Symbol
- -
- Assembly
- GCA_963930825.1
- Location
- OZ005758.1:25686919-25689153[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.032 3.2 8.6 0.2 1 21 3 24 3 25 0.87 2 14 0.054 5.4 7.9 0.2 3 22 32 51 30 51 0.93 3 14 8.2 8.1e+02 1.0 0.1 1 12 154 165 154 168 0.85 4 14 0.00016 0.016 15.8 0.5 1 23 334 356 334 356 0.98 5 14 0.00021 0.021 15.5 1.6 1 23 376 398 376 398 0.98 6 14 0.049 4.9 8.0 0.7 1 23 429 450 429 450 0.88 7 14 0.019 1.9 9.3 0.9 3 23 458 477 456 477 0.95 8 14 4.9e-05 0.0049 17.4 0.5 1 20 483 502 483 504 0.95 9 14 6.7e-05 0.0066 17.0 2.4 1 23 511 533 511 533 0.98 10 14 1e-06 0.0001 22.7 2.9 1 23 539 561 539 561 0.98 11 14 2.2e-05 0.0022 18.5 9.1 1 23 567 589 567 589 0.99 12 14 3.3e-05 0.0033 18.0 0.4 1 23 595 617 595 617 0.98 13 14 1.4e-05 0.0014 19.1 0.2 1 23 621 643 621 643 0.98 14 14 0.00024 0.024 15.3 0.1 1 23 651 674 651 674 0.95
Sequence Information
- Coding Sequence
- ATGGGTTTTATTTGTCCACTGTGTTGTGATGAAACATTTCCATCACTTAGTGCATTGAAATACCATTTGTTAAGTATTGTAGAGAATTTATTTTGTCCGGGATGTAATTGCAGATTTGATGATATTCTTGAATTAATCGAACATTTAAACACCGAATGCACAAAGGTCGATTCTGAGGACAATCCTGAGAAAAGTGAACACAAGATTGTACAGTTAGATAAGGACTCGAATATAGAATATATcaaaattgaggtgctaaacacAGCCGGTGAGGAAGGGAAACAAGGCTCGAAAAATGAAACTGTTGTAAAAGTGGAACAAAATGAAAGTGAGGCAAATAATTCGGAACTTCAAAATAGTATACTGGCCCAAGCGTTATTTGCTGGAAAAATGAACAAACAAGAACAAACAAAGAAGGAAAATGAGGAAGAAGAATCCCAAGAAACTGAAGAAATGACTTATTTATGTCAAACGTGtaacataaattttaattccatCGAGGAGCACCTGGAGAAATACCACCAAGGAGAGGAAGTCCTAGTTGCCACCGAAGACGATGATGAAAACGAAGAAATCGTTCTAACACACGAAACTGCCGACGAAGAGGGCGAAGAAACCGAAGAAGTATACGAAATCAACTACGAAGACGTCCCAATGGACGGAGTTATAGAAAACCCAACCGAAAAAAGCCATACAATAACCGAAGAAGAATGTGTAGACAAAGAGGGCCGCTTATACACCCGAAAAGTGGTGAAAATCGACAAATTCTGGATGGAGAAAGAGTCGAAAACCCGTCAACCAATCATACAAAAGTACATCTTCGACAAAGCAAATggaaaagtgaaaaaaatcacCGAAGACGAAGAGAACTTGATCGAagacaaaacaaaaataatcaaaatctACCACTGTCCAAACTGTTCGTTAGTACAATTCCCGAATTATGAAGCGTTCTTCAAacacaaatgtcaagaaagtAGCAACAAACCGAAACAAAAGTACCGCTGCGAGTACTGCAACGTTCTCTTTGTCAGTTTGAAACAATTACAAGTGCATTTAGAGAAGCACGTCGCCGATGGCACCGTCGACAATGCAAACGCCACCACAACAGTCACTCTAGGCCCATACGAGTGTAATGTGTGCCAAACAAAGTTCCCCTCCTTCAAATCGCTCCGTTTGCACAGTCGAATGCACGAACCGGTGCCAGTTAAGCACGTCGAAGCGCCCGTTAAATACACCAGCGGCTTCGTCAGTGGCGATGAAGAGGACAACCCAAATCACTTACACACTTGTCCGATTTGCGACAAAATCTACAACATTGCCTACAAAGATGTCCACATGAAATCGCACACCGACGTCGATATGATCAATTGTCAAACTTGCAATCGGAAATTCTCCAAAGACAACATCGAAATGCACCTGAAAGCGCATACAAACGTAAAGAAATTCACATGTTCCTATTGTAAGAAAGCGTTTGTCACATTCGATTCATTGAACGAGCACATCACGAACCAATGCCAGAAACGGCAGTACGAATGCCAGTTCTGCGGTCGTCGATTCTCTCGACCGCACGAAAAAGTCAAACACGAACGAATCCACACTGGAGAGAAGCCCCATGTGTGCGATGTGTGTGGGAAGGCGTTCCGAGTGAGTTACTGTCTTACATTGCATATGAGAACGCATTCGGGATCGCGGCCCTACCAATGTGAGCATTGCAACAAGCGATTCAAATCGCACAGTGCCTACAACCACCACGTCCGAACGCACAGCGATGTGAGAGCGTACAAATGTCCGTTTTGTCCGAAGGCTTTCAAAACGATGGTCCAATTGGCGGGCCATAAGAACAGCCACATTAAACCGTTCACATGCACCGAATGCAATCGGCCGTTTGCCAGTTTGTATGCTGTCCGAGCGCACATGGACACACATAAAAGGGATAACAATTTGAAGTATGATTGTTGGTTGTGTGGGGCGTCGTATGCGAGGGCGTTCGCATTGAAAGATCACATGAAAGCGCAACATGGagataatattaatattagTTTTGAGCAATTGGAAGAAGAACAACAAGGGAATGATGTGGTGGAGGAGGATGTTATTAATGAGGAAGTGGCGGTGAGTGCAAGTCAAATTGAGCAGGAATTAAGTGAGGGGATGGAGATGGAAGAAGTGGCCCAATAG
- Protein Sequence
- MGFICPLCCDETFPSLSALKYHLLSIVENLFCPGCNCRFDDILELIEHLNTECTKVDSEDNPEKSEHKIVQLDKDSNIEYIKIEVLNTAGEEGKQGSKNETVVKVEQNESEANNSELQNSILAQALFAGKMNKQEQTKKENEEEESQETEEMTYLCQTCNINFNSIEEHLEKYHQGEEVLVATEDDDENEEIVLTHETADEEGEETEEVYEINYEDVPMDGVIENPTEKSHTITEEECVDKEGRLYTRKVVKIDKFWMEKESKTRQPIIQKYIFDKANGKVKKITEDEENLIEDKTKIIKIYHCPNCSLVQFPNYEAFFKHKCQESSNKPKQKYRCEYCNVLFVSLKQLQVHLEKHVADGTVDNANATTTVTLGPYECNVCQTKFPSFKSLRLHSRMHEPVPVKHVEAPVKYTSGFVSGDEEDNPNHLHTCPICDKIYNIAYKDVHMKSHTDVDMINCQTCNRKFSKDNIEMHLKAHTNVKKFTCSYCKKAFVTFDSLNEHITNQCQKRQYECQFCGRRFSRPHEKVKHERIHTGEKPHVCDVCGKAFRVSYCLTLHMRTHSGSRPYQCEHCNKRFKSHSAYNHHVRTHSDVRAYKCPFCPKAFKTMVQLAGHKNSHIKPFTCTECNRPFASLYAVRAHMDTHKRDNNLKYDCWLCGASYARAFALKDHMKAQHGDNINISFEQLEEEQQGNDVVEEDVINEEVAVSASQIEQELSEGMEMEEVAQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -