Suni017018.1
Basic Information
- Insect
- Silvanus unidentatus
- Gene Symbol
- -
- Assembly
- GCA_963930825.1
- Location
- OZ005762.1:13415075-13420457[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.035 3.4 8.5 1.4 1 23 147 170 147 170 0.93 2 19 0.26 26 5.7 8.3 1 23 177 199 177 199 0.97 3 19 1.6e-05 0.0016 19.0 0.8 1 23 205 228 205 228 0.97 4 19 0.012 1.2 10.0 0.1 1 23 234 256 234 256 0.93 5 19 4.4e-06 0.00044 20.7 0.5 2 23 263 284 262 284 0.97 6 19 0.0008 0.08 13.6 1.1 1 23 290 312 290 312 0.98 7 19 0.00011 0.011 16.4 0.1 2 23 319 340 318 340 0.96 8 19 0.0028 0.28 11.9 2.0 1 23 346 370 346 370 0.93 9 19 5.5e-06 0.00055 20.4 2.5 1 23 376 398 376 398 0.98 10 19 1.9 1.8e+02 3.0 0.4 1 13 404 416 404 418 0.84 11 19 0.02 1.9 9.3 2.6 1 23 525 548 525 548 0.94 12 19 2.3e-05 0.0023 18.5 1.5 1 23 583 606 583 606 0.97 13 19 0.0013 0.13 12.9 0.4 1 23 612 634 612 634 0.98 14 19 3.2e-06 0.00032 21.2 0.9 1 23 640 662 640 662 0.98 15 19 0.31 31 5.5 3.9 1 23 668 690 668 690 0.94 16 19 0.00012 0.011 16.3 0.1 3 23 698 718 696 718 0.97 17 19 0.047 4.6 8.1 2.2 1 23 724 748 724 748 0.91 18 19 6.5e-07 6.4e-05 23.4 2.6 1 23 754 776 754 776 0.98 19 19 0.01 1 10.1 3.5 1 23 782 804 782 804 0.99
Sequence Information
- Coding Sequence
- ATGGACAGAAATTATTTTTGTCGTACTTGCACACAAAACATTTCAGACAcaacatttaattcaatatttgAAGAAGAAATCCGTCGAATGTTAACAAAATGCACTGAATTAATTATAGAAGAGAACGATTTACCATCCGAGATATGTTTAAACTGCACGAATAAGTTGAAACAAGCATTTTCTTTTCGAAAACAAGCAGAAGAATCTGATCAATTTTTCCGAAACCAAAATGCTCCAAAAACAGCTTTAGATGACAATTTTTTGGTATTAATAGATGAAGAAATTTCGGAAGAACCTGAAAACTTCGTGGAAGTGAATAATATAGAAAAGATTGTTATCGACAACGCAATTCCTGATTCAACATttaatcaaaaaaaaattctccAAGTCCCCAACAAATTACGAAAAGCAAGACCACAAGATGTTAAAAATCGAATATTCATCTGTCCAGAATGTAgtgaaaattttaacaaagAAGCAGATCTTCGATGTCACAGAAAAGAGCAACATCCCAACTCAAGAAGAAAGTTTTTCTGCGAATATTGCCCCAGACACTTTCTTAGCCGTCATAGTTTACATAAACATGTTTATACACATTTGGATAACGCATcatttaaatgtttaacatGTGAGGAAGTCTTTAAAAATCCTTATGACCTTCGAGCGCATGAAAAACGAAAACATTCAGATATAGAAAAATTCCTATgtgaaatttgcaaagaatTGTTCATAACAAAAGAGGGATTTGAAAATCATGTGGCAAATCATAAAAAGAATGAATCGTTGGTGTGTGAAGAATGCGGAAAATCATTCACaatcaaatataaattaacaGAACACAAACGAATTCATGATCCAAAGACAACTTTTACTTGTAAATTTTGTTCTAAGCCATATCCAAGGGAAAGATTACTGAAATTACACGAAATGAGTCACACAAATGAACGGGCGTTAATTTGTAGTGTTTGTGGCAAAGGAGCATTTACTATAAGCGATTTGAATGTTCATATGCGAACACACACTGGAGAGAAACCGTTCAAATGTAAATTTCCACCATGTGAAAAACGATTTAGGACTTTAAGTGCACTTTCAGTTCACCATCTTACCCATACAGGTGAAAGGAGACACGTTTGTGAAACTTGTGGGAAAGCATATTACACTTCACGTGAATTAAGAACTCATACGAGGACacatactggtgaaaaaccgtacaaatgtaatttatgtGATTTTAAAACAGCACATTCAGAAGAGAATGATTTGCCATCCGAGATTTGTTTAAACTGCATAACTAAATTAAAACAAGCATATTCCTTTAGAAAACAAGTAGAAGAATCTGATCAATACTTCCGAAACAAAAATACTTCCAAAACAGATTTAGATAACAATTTTTCGGAATTTAGGGATGAAGGAATTTTAGAAGAGCCTGAAAACTTTGTGGAAATAATGGTAGAAAAGAGGATCATCGGCCACTCCATGCCTGAATCAAAATCTGATCAAAAAGACACTCTCAAAGCGCCCAAAAACTTGCCAAAAGTAAAACCAAAAGACGATATTGCTAAAAATCGAATATTCACATGCCCAGAATGTAATCAACATTTCACCAAAGAACTTGATATCAGATATCACCGAAAAGAGCAACATCCCAACTCAAAGAGAATATTTTTCTGCGAACATTGTCCGATACAATTTCTTTGCCGTGAGAGTTTACGTAAACACGCTTATGTCCATTTAGACATCacattatttaaatgtttaactTGTGagaaagactttaaaaatccTTATGACCTTCGAGCGCATGAAAAACGAAAACATTCAGACATAGAAAGATTCAAATGTAATCTTTGCAATAAAATTCTCATAACAAAGGAAGGATTTGAAAGTCATGTCGCAAAACATAAAGAGGAAGAATCGTTTACCTGTGAAGTATGCGGACAATCGTTCacaataaaatatcaattaacaGAACACAAACGAATTCATAATCCAGAGACGACGTTTACTTGTAAATTTTGTTCTAAAATATTCCCAAGGGAAAGATTATGTAAATTACATGAAATGAGTCACACAAATGAGCGGGAGATAATTTGTAGTGTTTGTGGAAAAGGAGTAGTTAATATAACCAAGTTGAATATTCATATGCGAACACACACTGGAGAGAAACCGTTCAAATGTAAATTTCCACCATGTAAGAAACAGTTCAGTACTTTAGGTTCACTTGCAGTTCATCATTTTTCCCATACAGGAGAGAGAAGACACGTTTGTGAAACTTGTGGAAAAGCATATTACACTTCACAACAATTGAAAACTCATATGAGGACACATACCGGTGATAAGCCGtacaaatgtaatttatgtaattttaaaaCAGCACATTCAGGTGCTTTGTACACACACAAGAAATCTCATAAATTGTTGTAG
- Protein Sequence
- MDRNYFCRTCTQNISDTTFNSIFEEEIRRMLTKCTELIIEENDLPSEICLNCTNKLKQAFSFRKQAEESDQFFRNQNAPKTALDDNFLVLIDEEISEEPENFVEVNNIEKIVIDNAIPDSTFNQKKILQVPNKLRKARPQDVKNRIFICPECSENFNKEADLRCHRKEQHPNSRRKFFCEYCPRHFLSRHSLHKHVYTHLDNASFKCLTCEEVFKNPYDLRAHEKRKHSDIEKFLCEICKELFITKEGFENHVANHKKNESLVCEECGKSFTIKYKLTEHKRIHDPKTTFTCKFCSKPYPRERLLKLHEMSHTNERALICSVCGKGAFTISDLNVHMRTHTGEKPFKCKFPPCEKRFRTLSALSVHHLTHTGERRHVCETCGKAYYTSRELRTHTRTHTGEKPYKCNLCDFKTAHSEENDLPSEICLNCITKLKQAYSFRKQVEESDQYFRNKNTSKTDLDNNFSEFRDEGILEEPENFVEIMVEKRIIGHSMPESKSDQKDTLKAPKNLPKVKPKDDIAKNRIFTCPECNQHFTKELDIRYHRKEQHPNSKRIFFCEHCPIQFLCRESLRKHAYVHLDITLFKCLTCEKDFKNPYDLRAHEKRKHSDIERFKCNLCNKILITKEGFESHVAKHKEEESFTCEVCGQSFTIKYQLTEHKRIHNPETTFTCKFCSKIFPRERLCKLHEMSHTNEREIICSVCGKGVVNITKLNIHMRTHTGEKPFKCKFPPCKKQFSTLGSLAVHHFSHTGERRHVCETCGKAYYTSQQLKTHMRTHTGDKPYKCNLCNFKTAHSGALYTHKKSHKLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -