Suni013608.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Silvanus unidentatus
Gene Symbol
-
Assembly
GCA_963930825.1
Location
OZ005761.1:262534-264956[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 8.8 8.7e+02 0.9 0.5 3 17 11 25 10 26 0.90
2 13 0.00019 0.018 15.6 0.1 1 23 309 331 309 331 0.95
3 13 1.1e-05 0.0011 19.5 1.5 1 23 339 361 339 361 0.99
4 13 1.7e-05 0.0017 18.9 0.2 2 23 369 390 368 390 0.96
5 13 7.1e-06 0.00071 20.1 0.4 1 23 396 418 396 418 0.98
6 13 0.0015 0.15 12.8 6.2 1 23 425 447 425 447 0.99
7 13 3.8e-05 0.0038 17.8 1.4 1 23 453 475 453 475 0.96
8 13 4.9e-06 0.00049 20.6 0.3 1 23 481 503 481 503 0.98
9 13 5.7e-07 5.7e-05 23.5 1.2 1 23 509 532 509 532 0.96
10 13 1.4e-05 0.0014 19.2 0.5 1 23 538 561 538 561 0.95
11 13 8.9e-06 0.00088 19.8 3.0 1 23 567 589 567 589 0.99
12 13 8.7e-05 0.0086 16.7 0.4 1 23 595 617 595 617 0.94
13 13 0.0023 0.23 12.2 0.1 1 21 623 643 623 647 0.92

Sequence Information

Coding Sequence
atGTCCTCTTCAAATGGAAATGCCAGTTTATGCTTAATTTGCAATGCTAGTTGTGTGAGCAGTCGAAATTTCGTTCGAATTTTCAACAATGAGACTATAAATAATCGACCAGTGAAGCAAATCCTAGCGCAAATATTCGGCAAACATGTAAAAGAAGACAATGTGGATGGGAACCTTTTATGCAAgaaatgttttaaattaattgacGAATTTGAGAGTCTTCAATCGCGTGTGAATGAAATCAAGAGTGATTTGTTAACGAATTTCAAAAATACCTCCGATAAGAAACAGGACGATGAAGAGTACGTTAATGATATGAAAGAAAAGGGGGAAATGTGTGTAGAAAGTGATGTACCGAAAAAGATACTCGACATACCGTCCTCGGACGATGATACGATGGGCAATCCTTCCTCATCGGTGGAAAAGAATTCGTTGCAAACAATTGAAGACATCGAAATGGAGCTGGTGAAAATGCATGGTGGCATTGAGGATGGAAAAGGCGATGAAAATAGTGCGAATGAAGAGGAAACGATGGTGGTGTTTGCCAGCAGCGACATGGTCGACTCTGAACCGGTGGACGAGCATTCGTCGGACGACGATTACGATCCACACAATTCCAGTAGTGATAACATTGTAGAAGCGGCAAGCAGCGCTGAGGAATCGGCTATTAAAATCAAAATCGAAGCGAATCAAGATGAGAGCAGCAGTTCAGGTGTACCAAACATTTTAAGAAAGAAATACATGACCATGAACGGCGGTGCATCCAGTTCCGAAGAGAAGAAAATCGAAGTAATGATGAATGCACAGAGTGTGAACCGCGAAGGGAATTTATACACTTGCATGCTATGTCAAGGGGACGAGACGGTGGCCGGTGAGGCACAAGCGATTATTCAACACTTGAAAACCGAACACAACACTCGTTTGTACATTTGCGACATTTGTGGCCAAGATTTCCGGAAACGGAACGAACTGTCAGCGCATGTGGACGAGCATGTCGCCACCGAAGAGGGCGACTTTCAATGCGAAGTGTGTAATCGGATTTTTAGCAATTTGAGATTGTTTCGTATTCATAGACGGATGCATTATCCACAGAACAAAGCGTGGGTGTGTAATACGTGCGGAAAAAAGTACAGCAGCAAGAATCTGTTAGAGGAACATGTGAATGTCCATTTGGGACTACGGCCGTACGTTTGTAAGATATGCGGCAAAGATTTCGCCAGTAAATACACGGCGAAAGCGCATGAAAAAACGCACGAAGTGCGACCACGGCCCTACAGATGTACGCATTGTAGTAAAACATTCTTAAGTCATCAGAATTTGGCGCAACACGAACGAACGCATACCGGGTTGAAGGAGTTCAGTTGTCATTTGTGTGGTAAACAGTTTGGTTCGGCGCATAATTTGGAGGTGCATTCAATTGTGCATACCGGTTACAAGCCGTTCAATTGCGGCATGTGTGGTAAATCGTTTGCGAGGAAAGCGGAGATTCGTGACCACGAACGGACACATACCGGCGAACGGCCGTACCAGTGTGAGTTTTGTGGGGCGACGTTTAGTCAACGATCGAATTTGCAGTCGCATAAAAGGGCAACGCATTACGATGATAAACGGTATCGGTGTGAGGATTGTGGGAAGGGATTTAAGAGGAGACGATTGTTGGATTACCATGTGAAGGCGATCCATACGGGTGAGAGGCCGTTCAAGTGTGAAGTGTGCGAGACGACATTTGTTTATCCGGAGCATTTTAAGAAACATCGCAGGATTCATACGGGGGAGAAGCCGTTCTTGTGTGAAGTGTGTGGGAAAGCGTTTAATAGTCGTGATAATCGGAATGCACATCGGTTTGTGCATTCGGATAAGAAGCCGTATGAGTGTTTGGTGTGCGGTGCCGGGTTTATGAGGAAACCGTTACTGTATCAGCATATGCAGGCGCAAGGCCATTTGAATGATACAATTGTGGTGAATCAGCCACGGTTGCCGACCGATGATGATCAACAGCAGTTGGTGAAAGTTGAAGGGGATGGAATGGAGATTATTGATGCTGCAACGGCAGCGGAATCGAAATTGTATATTGCAGATCATGATGGGGAACAGATTATATTTAATGGGCAAGAGTTGAAGTTTGTTAATGAGGATGATGGGAATGAGGGGGAGATGGTGGAGAGTGCGGAAGAGAGTACGAGTGGACAGGTGGAAGGGGATTACGATGAAGTGATAACGAGTGAGGTGATTGCGAATGGGGAGACACAGATTATTGAGACGCCCGATGGTCCGGTGCAATTGGTTAAAGTTAGAATACCGAATGAGAATGGGGAAGAGGAGGAAGCGTGGATTAAGATTGTTTCTGAGGAGAGTGCCGAGTAG
Protein Sequence
MSSSNGNASLCLICNASCVSSRNFVRIFNNETINNRPVKQILAQIFGKHVKEDNVDGNLLCKKCFKLIDEFESLQSRVNEIKSDLLTNFKNTSDKKQDDEEYVNDMKEKGEMCVESDVPKKILDIPSSDDDTMGNPSSSVEKNSLQTIEDIEMELVKMHGGIEDGKGDENSANEEETMVVFASSDMVDSEPVDEHSSDDDYDPHNSSSDNIVEAASSAEESAIKIKIEANQDESSSSGVPNILRKKYMTMNGGASSSEEKKIEVMMNAQSVNREGNLYTCMLCQGDETVAGEAQAIIQHLKTEHNTRLYICDICGQDFRKRNELSAHVDEHVATEEGDFQCEVCNRIFSNLRLFRIHRRMHYPQNKAWVCNTCGKKYSSKNLLEEHVNVHLGLRPYVCKICGKDFASKYTAKAHEKTHEVRPRPYRCTHCSKTFLSHQNLAQHERTHTGLKEFSCHLCGKQFGSAHNLEVHSIVHTGYKPFNCGMCGKSFARKAEIRDHERTHTGERPYQCEFCGATFSQRSNLQSHKRATHYDDKRYRCEDCGKGFKRRRLLDYHVKAIHTGERPFKCEVCETTFVYPEHFKKHRRIHTGEKPFLCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGAGFMRKPLLYQHMQAQGHLNDTIVVNQPRLPTDDDQQQLVKVEGDGMEIIDAATAAESKLYIADHDGEQIIFNGQELKFVNEDDGNEGEMVESAEESTSGQVEGDYDEVITSEVIANGETQIIETPDGPVQLVKVRIPNENGEEEEAWIKIVSEESAE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-