Suni004569.1
Basic Information
- Insect
- Silvanus unidentatus
- Gene Symbol
- -
- Assembly
- GCA_963930825.1
- Location
- OZ005757.1:32890712-32894799[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.00016 0.016 15.8 3.5 3 23 179 200 178 200 0.94 2 21 0.15 15 6.5 7.4 1 23 315 338 315 338 0.97 3 21 0.012 1.2 9.9 2.8 1 23 373 396 373 396 0.96 4 21 0.042 4.2 8.2 0.0 5 20 405 420 402 422 0.92 5 21 0.075 7.4 7.4 0.0 1 23 428 451 428 451 0.90 6 21 0.0012 0.12 13.1 0.9 2 23 530 551 529 551 0.96 7 21 0.0062 0.61 10.8 0.8 1 23 574 595 574 596 0.95 8 21 0.0025 0.25 12.1 0.5 2 23 600 621 599 621 0.96 9 21 0.0061 0.6 10.9 0.6 1 23 650 672 650 672 0.95 10 21 0.0078 0.77 10.5 0.3 1 23 689 712 689 712 0.89 11 21 0.015 1.4 9.7 1.2 2 23 726 747 725 747 0.96 12 21 2.2e-05 0.0022 18.5 4.0 1 23 785 807 785 807 0.97 13 21 0.18 18 6.2 1.3 3 23 828 849 828 849 0.94 14 21 9.5e-05 0.0094 16.5 0.9 1 23 871 893 871 893 0.98 15 21 0.0012 0.12 13.1 0.2 2 23 907 929 906 929 0.96 16 21 0.00029 0.029 15.0 0.2 1 23 948 970 948 970 0.95 17 21 0.019 1.9 9.3 0.1 1 23 1002 1025 1002 1025 0.95 18 21 0.0008 0.079 13.6 2.1 2 23 1036 1057 1035 1057 0.96 19 21 2e-06 0.0002 21.8 1.9 1 23 1092 1115 1092 1115 0.96 20 21 8.7e-06 0.00086 19.8 1.1 1 23 1122 1144 1122 1144 0.98 21 21 0.0059 0.59 10.9 1.1 1 23 1174 1197 1174 1197 0.94
Sequence Information
- Coding Sequence
- ATGAGTGGTATTCCAAGTGTTCAGGCCTGTTGTAGACTGTGTCTCTGTGACAAAACGGATACTCTTGTATCGGTTTTTGGTGCAGCCACCGAGGACCGTTCCTTGTCACAGAAGATTTTAGCCTTTGTAGCCGTTCAGATAACGGCATCGGATAAACTGTCCACAATGGTGTGTTCCCCATGTGTATCGCAATTGGAGTGTTGGCAAAAGTACAAGGAGGAATGTGAGAAGAATCAAAATAAACTTGAGCAGTTATTACACGCTGCAAACGTACCAGGTCTTCATGATATGAGTATCCAAATTAAAGAGGAACCACCAGATGAGGTGGAGATGCTGGAGAATGAAAGCGGATTACGTGCGATAAAACCGGAACGTATAGATGAACCCGAGGTTGTTATGGAGGAGGACTTTGATTATCCACCACCTTTAACACCCTACAATCAACACCCGATTGAGGATGATGATTCGCAAATATCGCAGACTTCTCAAGAGTCGCAAAATAGCAGCGTTTCAGattCTTTAAGTGGTCGAATGTGTTCCATATGCGATAAATCCTTTAGCACATCATATAATCGTCGCAAGCATGAGAAACACATTCACGGAATATTAGAAACCGCGAAAAAGTCGTCAGTGGAGAGTGCAACTAGTAATGATGAAGTGTCCCAGAATTCAATAGAATCTCAAAAAGAATCACATGAGAAAGTTACGTCGGATGCAGAGCAACAGAAAATCGCCTTTGCCGCTGGATTGAAGTTGTTACAAACGAACGAAACGCCGATTGCCTTTGAACCTTTATCCAAAGTCGAGTTCAGTTACATCGAGAAATGTAAAGCGATGATAAAAATGTACAAGTCGCGTGTATGTGCGTGTCATAACGTGtcatacaataatttaaaaggACTCTTATCACATCTACGTTCATTAAACATTTGGTTCCCGGTATTTACATGCTATCATTGTATGATTACATATACAGATCGCTCTTCCTTCACTCGTCATCATTTACGCTTTCATAAAAACAGTGACGAACATCAACAGGGCACATTCATTGAAGGATTAATAAAGTTGTCGAATTTACGGAAGAGGAGCGATTTGAAGACGCGCCTTTACCAAAATTTTCGATGCAGCAAATGCCGGTTTATATTCTCTTTTCACGAAGAGTTCATTAATCATATTAACGAGGATCATATACCAGATACGTCGCCGATTTGTATATGTAACAAGACTTTCTCGGATATTGAAGAATACAAGAAACACGTTTATGTGAGTTGTTTATTGGAATACTATTGTGACATTTGTACGGAACGTTTACCATCTGCTGAAGCGTTTATAAAACATGCCGCTGAATTGCACGATAATTCGGAAGGGTTCTCTATTTTACAAGAAGACACTGTGAAACAAAGACGATCAGCGACAAGAAACTCTGTTCCATCTCCTAGTTTGATAGTGAGAACAAAACGTCGTAGTTCTTTCTATAAACAAGCGCCGGTACTCGAACCGGAATTGGAAATGGATGAAATGGATGATAAGAAAGAGCTTACATGCAAAGTGAAAAATCCAGCATCGCAATGGAAGAGGAAACCAACAAAGTGTTTGGCTTGCGAAAAGGTTTACTCTTCGTACGCGAATATGATGCGACATTATAAGACACACAATCAATTAGAACAGCAAAGCAGTGAAGGAAGTGAAGACGGTGAGAATCCAGAGAATGCAGTCTGTTATTCCTGTCCGGATTGTGGAGGAATGTACAATGCAACCAAATGGCAAAAACATCTACGTGAACATCATAAAACGAAATCTTGTCCGGATTGTGAACGTGTCTTCCAATTCCAAACGGAACTCGATCAACATCGCACCATACATCTAAATTTGAAAGTGTACAGAGACTCGAAGACGAAATCATACAAAAGTGCTGTAGTTAATCCAAATTCAGAGGCGGGAATTATTCATATTTGCGACCGTTGTGAGACGACTTTTGCGACAGTTCAAGAGCTACAAGCACATAAACTGCTCCATGAAACGATGCCACAATTGTCCCCAAACAAAGATGTAAAACTGAACGAATTCGAATGTAAAGACTGTGATGTGGTATTTAATGGTTATCGACAATTGTGGGAACACGATCGTAGCAATCATCCGGAGAAACGTACACCGCAATCAAAGAATTTCCCTAAACAGTGTAAATATTgtgataaattgttttatactGGCGGATCGTATTCGAATCATAAGATTATGCACGAACGTAGCGGTGCAACTGTGTTAGTGGCCAAAGCAGCAGAGCCTTCAAAAGCGAAGAATAAACAGTCGAATAAGGAGAGTGATGAGGATGACGAGGCGGGCGAGTCGTATCATACTTGTAACAAGTGTTTCAAAGTGTTTGCTTCAAAGAGTCAGTTAAGAAGTCATGCGAAATCGCATACAAAATCAACAGTCACTGCGAATAGTGGCAGTAAAGGGAAAGTGAGTAAGAAAGTCTGGTGTGATTCGTGTCATGTTTCATGTGAGAATGCAGAGGCATTGGAGAAACATCGATTAGAGGAACATGTGGTGAAAAAAGAGACGATTAAAACGGTAAATAAAGTCGTACTGCCGAACCAAGGGGTTGTGTTCACTTGTGATGTGTGTGTGATGACATTTAGTACGAAAATTGCATTGAAAAGACATAAAGAGAGACACGCTCAAGAAATTCGAATTCTTTCCAAAACACAGACtgtttattgtaaattttgtaAGATTCCATTCGAGTCTGTACCATTATTGAACAAACACATGCAAACGGACCATAAAAATGAATTGGAACAAACAAAAGTGCAGCCAGTTAAGAaaaaaatcgcacaatattcATGCGATATTTGTAATAAGAATTTCCAATCGCCAACGGCTTTGTATGTGCATCAAGGATGGCATCGCAGGACGAATTATGGACTGACTAATAAGCAAGGGAAGACTCCGAAATCGCCCACGAAAGAAATTCAAGAAGAGGTACCGAAAAAGTCCAGTTTTCAGTGTAACACTTGTGAAGCGGAACTGCCCAACAACACCGCATTGCAGATACACATTTTGGAAAAACATCGAAATGTTGACGCGATTATTCTGACGCTTCGTTGTAATACTTGTAAAACGGACTTTAAAACACAGGAAGAGTACGAGAATCACAAACGCTTGCACGATTTCTTGGAGAAACAGCAACAGAATGTGCATTTGTCGGCAGTGCCGAAACAGAAAGCGGCCAAACAGCCACCAACAGAGACAAATCCAACGAAACCGAAGCATATTTGTCAACATTGCGGGACTCAGTTTACAAGAGTGGACAATTTGGCGGTACATATGCGTACTATTCATAATATCGTGAGTGGCGAGTTTAAATGCACGCAATGTGACCGAGTGTTTGATAAACAAATGTCTTTAACGATCCATTTGAAGGTGCACGAGAAGCAAAAGTCATTAACTGGCACGAAGTGTGAGAAACCGGCGCTAAAACCGAAGATTACCAATTCGAATGCAAAGACAGCAGCATATTGTTGCTCGATTTGTAATATGGGCTTTGATCTGCCAAAGGATCTTCGCACTCATACAATCAATTCGCACCCATTCTGA
- Protein Sequence
- MSGIPSVQACCRLCLCDKTDTLVSVFGAATEDRSLSQKILAFVAVQITASDKLSTMVCSPCVSQLECWQKYKEECEKNQNKLEQLLHAANVPGLHDMSIQIKEEPPDEVEMLENESGLRAIKPERIDEPEVVMEEDFDYPPPLTPYNQHPIEDDDSQISQTSQESQNSSVSDSLSGRMCSICDKSFSTSYNRRKHEKHIHGILETAKKSSVESATSNDEVSQNSIESQKESHEKVTSDAEQQKIAFAAGLKLLQTNETPIAFEPLSKVEFSYIEKCKAMIKMYKSRVCACHNVSYNNLKGLLSHLRSLNIWFPVFTCYHCMITYTDRSSFTRHHLRFHKNSDEHQQGTFIEGLIKLSNLRKRSDLKTRLYQNFRCSKCRFIFSFHEEFINHINEDHIPDTSPICICNKTFSDIEEYKKHVYVSCLLEYYCDICTERLPSAEAFIKHAAELHDNSEGFSILQEDTVKQRRSATRNSVPSPSLIVRTKRRSSFYKQAPVLEPELEMDEMDDKKELTCKVKNPASQWKRKPTKCLACEKVYSSYANMMRHYKTHNQLEQQSSEGSEDGENPENAVCYSCPDCGGMYNATKWQKHLREHHKTKSCPDCERVFQFQTELDQHRTIHLNLKVYRDSKTKSYKSAVVNPNSEAGIIHICDRCETTFATVQELQAHKLLHETMPQLSPNKDVKLNEFECKDCDVVFNGYRQLWEHDRSNHPEKRTPQSKNFPKQCKYCDKLFYTGGSYSNHKIMHERSGATVLVAKAAEPSKAKNKQSNKESDEDDEAGESYHTCNKCFKVFASKSQLRSHAKSHTKSTVTANSGSKGKVSKKVWCDSCHVSCENAEALEKHRLEEHVVKKETIKTVNKVVLPNQGVVFTCDVCVMTFSTKIALKRHKERHAQEIRILSKTQTVYCKFCKIPFESVPLLNKHMQTDHKNELEQTKVQPVKKKIAQYSCDICNKNFQSPTALYVHQGWHRRTNYGLTNKQGKTPKSPTKEIQEEVPKKSSFQCNTCEAELPNNTALQIHILEKHRNVDAIILTLRCNTCKTDFKTQEEYENHKRLHDFLEKQQQNVHLSAVPKQKAAKQPPTETNPTKPKHICQHCGTQFTRVDNLAVHMRTIHNIVSGEFKCTQCDRVFDKQMSLTIHLKVHEKQKSLTGTKCEKPALKPKITNSNAKTAAYCCSICNMGFDLPKDLRTHTINSHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -