Suni005623.1
Basic Information
- Insect
- Silvanus unidentatus
- Gene Symbol
- -
- Assembly
- GCA_963930825.1
- Location
- OZ005758.1:4712636-4715405[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.1 1.1e+02 3.7 1.1 1 17 136 152 136 156 0.91 2 17 0.05 4.9 8.0 4.1 2 23 197 218 196 218 0.97 3 17 2.5e-05 0.0025 18.4 2.0 1 23 223 245 223 245 0.98 4 17 0.00012 0.012 16.3 4.6 1 23 251 273 251 273 0.97 5 17 0.00089 0.088 13.5 2.2 1 20 279 298 279 298 0.96 6 17 1.3e-06 0.00013 22.5 1.1 1 23 307 329 307 329 0.97 7 17 6.8e-07 6.8e-05 23.3 1.6 1 23 457 480 457 480 0.98 8 17 3.1e-05 0.003 18.1 3.7 1 23 486 508 486 508 0.98 9 17 1.1e-06 0.0001 22.7 3.0 1 23 514 536 514 536 0.98 10 17 0.0011 0.11 13.2 1.6 1 22 546 567 546 569 0.89 11 17 0.00026 0.025 15.2 0.7 1 23 581 603 581 603 0.96 12 17 0.0016 0.16 12.7 6.2 1 23 609 631 609 631 0.98 13 17 1.3e-06 0.00013 22.4 0.5 1 23 638 660 638 660 0.96 14 17 8.1e-06 0.0008 19.9 1.3 1 23 666 688 666 688 0.98 15 17 3.7e-08 3.7e-06 27.3 1.3 3 23 696 716 694 716 0.96 16 17 1.3e-05 0.0013 19.3 0.1 1 23 722 744 722 744 0.99 17 17 0.85 84 4.1 1.5 1 23 749 772 749 772 0.93
Sequence Information
- Coding Sequence
- atggatttggaacaattagatttaagtaaaatttGTCGTGCTTGTAAAGCATCGACAGAGGACATGAGTTCATTGTTTGAATCGCCtgaaaatcaaaatgaaaGTCCCCATCTTGACGAGATGCTAATGGCCTGTACATCTCTACaaATAAGCAGTCAGGACGGTTTACCATCGAAATTATGCCAATTATGTGTAACACAACTGAAGAACGCTTTTACGTTCAGGAAACAATGCGAACAAACAGACTCAAGCTTAAGATTGTACTTAAAAAGTATGAAATTACATGATATCAAAGAGGAAATCCAGAATTCGGATTACTTAGTTTCGTTAGAGTCCGAGGGGCCCTCCTTAGCTCACCACGACGATGACGACTACATCCAAATCCAAGACAACAATCTTATAATATTTACCTGTCGACAGTGTTTGGAAGATTTCAAGACACTCGATAGCCTACGCTTCCATAAAACTCAATCAAACTCAGTTTTCAAATGTACAAAACCAGCCCCAGAGACCGAGGTAAAAGTCGTTCCCTCCGCTCTCCCCAAGTACGACTTCCTCAGCTTAAGAGACAACAATCAAATCATATTAACATGTAGAACTTGTTTGAAAACGTGCATAACATTGGACGGCTTTCGTAGCCACAAACGTACCCACACCGGAGGCATGTTCAAATGTAAACAATGTGATCGAGAATACACTCGATTGAATTCATTACAAAGACATGAATTATCGCATAGCAATCAAAAAGTGCATGTATGCCGCATTTGCAGCAAAACATTAACACGTACTGATCATTTAAAACGCCATTTAATCACACATTTGAAAGAGAAACCGCATTCGTGTTCAAATTGTAACAGGGGATTCAGCCGTTACGAACATTTAAGCAATCACATACCGAAATGCAAAGGGGAAAAGGTGCATGTTTGCAATATATGCAACAAAGTGTTCTATCGAGAGGACAGTTTGGAATTACATATGAAATTACACGAAAACCATCAACCAACATTGCCAACAATCGATAATTTGGACAACATCGAAGAGCATTATTACGAGATTGACTATGACGATAATATGAATTTCTCGGACTCCGATGGTGAGGAGGAGGATTGCAAAATGAAATTACCAATGCCAGTTGAAACTAAATTAGACGAAGAGCCAGTAGAAGCAGAAGTGCCTCCTCCGAATTCAGAGAATGATGAGGAGGCGGTGAGCTCTGATTCTGATTATCTTCCCCaaaaaacaattacaaaaaaacGCGGTCGCGGTCGACCTCGTAAGAATCCCTTTTCGATAACAGCTAAATTAGCCAAAAGTCGAGGCCGAGGACGTCCGCCGGTTATCAAAAAAGAAGAAGTTGAAACTGGGGAATTTTCTTGTTCGAAATGTGATAAAACGTTTACGTCTGCTGGTCAACTAAGCAAACACAGTCGTACTGAACACGAGAGAGTGAAAAAATACAAATGCAAAGTGTGCGACAAAGAATTTGGTCGTATGAACCACTTAAAACGGCACAATCTCACACATTCCGAGAACAAACCGTACGATTGTGAAATCTGTTCCAAGAGTTTCGCTCGAAGAGATCATTTAACACAGCATAAAAGATCGCATACAAATCAATCGTTTCTAAATTTGGAGTTTGAATGTAGTTGGTGCGAGAAAGGGTTTAGTAAAGAGGAGCAATTGATTCGGCATTGTGCTACAAAACATGGCGAAGGCGAGAAGATGCCCGCTGAGAAAAAATACGAGTGTCCCATTTGTAAGAAAATGTTCACCACAGAGAAGTACAGAGATGTGCATTTGAAGGGCCATAATGGAGAGAAACATTTCCAGTGTAAAACTTGCAATAAATTCTATTTGTCTAAATCGCATCTAAATGAACATATGAAGTTTCATAATGATCATTCCAAGAAGTTTTTATGTTCGGAGTGTGGACAACGGTTTATTAGGAATGATTACTTGGTGATTCATATGCGGAGACACAGAGGAGAGAAGCCGTTTAAGTGTAAATTCTGTGGCAAAGgTTTTCCACGGACGACTGATTTGACGGTACATGAAAGGTATCATACAGGCGAAAAAACTCATCTATGTACAATATGCGGTCGAGGTTTCAGCAGGGCATATAACTTGACTGTCCACATGCGGACGCATACCGGCGAAAAGCCCTATCAATGTACGTACTGTGAGGCGGCGTTCGCTCAAGGTAACGATCTTAAGGCCCATATAAGGAGACACACAGGTGAACGGTTCCATTGTGAATTGTGTTCCGAAAGTTTCTTGATGGGTTACTTATTGACGCAGCATAAGAGGAATGCTCACGGCTTGAATGTTGTTAGTAATATAAGACGATTGCAGCCAGTAAATAAAAAGGAGGAAAATCCCGATCAGCCGCCACCGATAGAAATTCCTTTGCCTAAACCAGTGGTGCCTGAAATTGTGTTTAATACATTTCATCAAACGCAGTTTTCTATAGAGCCACTACAAATTCCAAGACAGTGA
- Protein Sequence
- MDLEQLDLSKICRACKASTEDMSSLFESPENQNESPHLDEMLMACTSLQISSQDGLPSKLCQLCVTQLKNAFTFRKQCEQTDSSLRLYLKSMKLHDIKEEIQNSDYLVSLESEGPSLAHHDDDDYIQIQDNNLIIFTCRQCLEDFKTLDSLRFHKTQSNSVFKCTKPAPETEVKVVPSALPKYDFLSLRDNNQIILTCRTCLKTCITLDGFRSHKRTHTGGMFKCKQCDREYTRLNSLQRHELSHSNQKVHVCRICSKTLTRTDHLKRHLITHLKEKPHSCSNCNRGFSRYEHLSNHIPKCKGEKVHVCNICNKVFYREDSLELHMKLHENHQPTLPTIDNLDNIEEHYYEIDYDDNMNFSDSDGEEEDCKMKLPMPVETKLDEEPVEAEVPPPNSENDEEAVSSDSDYLPQKTITKKRGRGRPRKNPFSITAKLAKSRGRGRPPVIKKEEVETGEFSCSKCDKTFTSAGQLSKHSRTEHERVKKYKCKVCDKEFGRMNHLKRHNLTHSENKPYDCEICSKSFARRDHLTQHKRSHTNQSFLNLEFECSWCEKGFSKEEQLIRHCATKHGEGEKMPAEKKYECPICKKMFTTEKYRDVHLKGHNGEKHFQCKTCNKFYLSKSHLNEHMKFHNDHSKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKFCGKGFPRTTDLTVHERYHTGEKTHLCTICGRGFSRAYNLTVHMRTHTGEKPYQCTYCEAAFAQGNDLKAHIRRHTGERFHCELCSESFLMGYLLTQHKRNAHGLNVVSNIRRLQPVNKKEENPDQPPPIEIPLPKPVVPEIVFNTFHQTQFSIEPLQIPRQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -