Basic Information

Gene Symbol
SNAPC4
Assembly
GCA_963930825.1
Location
OZ005761.1:19256219-19258899[+]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 5 0.0038 3.7 7.9 0.0 22 45 250 275 244 276 0.87
2 5 4.1e-08 4e-05 23.8 0.1 1 43 282 326 282 329 0.87
3 5 1.9e-09 1.9e-06 28.1 0.0 1 46 335 384 335 384 0.97
4 5 3.6e-09 3.5e-06 27.2 0.0 1 46 391 436 391 436 0.97
5 5 9e-09 8.8e-06 25.9 0.9 1 42 442 485 442 486 0.94

Sequence Information

Coding Sequence
ATGGACGACAAGGAGGACTTactaaaaattaaaaaggCATTAAATGACTATACACAAGACGAGTTTATATGCgatgaatttattaattatgaCGAAGAATGCGATGAGGACGATTTGGTAGTAGATTCAGACCCCGAATCTGCTATAATTGATTTGCATGAATCAGAATTAACAACAGTTTCTACCTACGACACACTACCAAAGTTAAAACCTAACGAAAAATCTGTAATAGATAGCTGTACTGATCCAGAATTAAAGAATCTTTTAATATTGAATCGTCAAAAACATGCACATCTGTTagaattttacaataaaattagaaACATCGTGTATGTGACTCAATCGAATCTCAAAACCAAATACACCCTAATTAAGGATCGCATCGAAGAGAAAAAACAACTACAACATTGTCCATTGACCAAACTGGGAGCCCCCTACTTTAAGGACAAACATTTATACCCAGCTCCAGTTAATTCagatgtaattaaaaaaagaaaaaataacgAAATAACCATTTACGATTTGAGTGTATCGACCAAATGGAAAGACACCGAATGCATTAAATTAAAAGGAGCTGTTAAGACAAGTTACAGTATTAATATGCAAAAagatttgttaaataaaataaacacttTGCAATTGTCGGAAACTAGCTCTGTTGATGAAATCAATGAATTGAGAGAGAAATTAGAATACTTACGAAGTAATGAGAACATCATACCACCAAAGGATTCCGATGAGTTCATTGATTGGAATCGAATTTCAGAAGTGTTTTTAAATAGCAAACATAGTGCTTTGGAGTGCCGTTCATTTTGGCACATTTATCTTCGGCCTTCCATCAATAAATCTCCTTGGTCCGAGGATGAAATTCAACGACTTACAAATATTGTTAAAAAGAACAATTATCAGAATTGGGAGAATATTGCACAGGAATTGAATACTGATCGAAGTGCATTTACTGCAGCATATCATTATTACagcaatttacataaaaagtacaaacgaGGCGAATTCACGAAACAGGAAGACACCTTACTGAGGAATATAGTAAGTCGTTATAAGAGTGGAAATTACATACCGTGGAACAAAGTTGCTGATCGATTTAAAGATCGCTCTAGACATCAATTATTTTATCGGTACACTTACTATTTGAAAAGTTCGAATTTAAATCGCAGTCGATTTACAGAAGCTGAAGATATTCTACTGTTAATATTAGTAGAGAAATTTGGTAGGAATTTTACAAAGTGTTCCGAATACTTTCCGCAACGTTCACAAATGCAATTGAAGGCAAGATATAATACGAATTTAGTGAAGGCTCTTAAGAAAGGATCATTTACAAGAGAGGAAGATCGAATTATTTGGGAATATGTTATGGAAAATGAAAGAAATAGTAATAAGTGGTCCGAGTTGGCGAAAAAATTGGATCGATGTAGAGGTCAAATTCGTCAGCGGTACAGTATTATAAAACATTATCTGAATGGTGGAGAAGATAGAAAATTGGAAGATGTTCCGAGTCGAAGACATTTAAACACAactgaaaatgaaaattgcTTTGGATTTTTAAGGCATATGGCTGATCAATTTAAAGATCGAAATATTCCAACATTACCGGCTATAGAAAAGTTACTTttagaaagaaaaaataatgttGTTGACACGGTAACAGAATCTGAAGGCGATGAGGATCTACAATCAATAGACGATTTGTTGGCAGAGTTTTTCTTCAATTCAGTTAAATTAGGTCCATCAGGAAACTCATTCAATGCCATTGATTTGAACACAGTTACAGATACTGTGCAAACGattgttaatttattacaaGTTAGTTTTGTATTACCAAAAGATTATCAAAACAATCCGAATTTAGATGATCTGGATAAAAGTATATTAACAAATTTAGTTAAATATCGTATGGTTCACGGACAACCATTATTGGTTTCATATAAATCTGAAAATAATGTGAACAGTAATGAACTTGTTCCTCCAAATTTAAATACTTTAATTGGTTTACGTGGTTTATTAATCAATCATCGATTGTATAAAGAAAATACCAAACATTTTTTAACTGAAATATCGTGGACAGTTGAGAAATGCATAAAAGAGATGTCATCAaagagaaaagtacaatttaagattaaaagtgatatattttttaaacgATTTTTTACGCTATTTAAATGGCCATCCATTTTAACATTACAAAAGCCGGGTAATTCACTTTTAAATGCGTTAGAGAATGGAAGTAAAACTAGTCGTCCTAAAATGAAAACGTATGGAAGTAGAAAAAGAGCATTAATGCCTGATGTGGCTAATAAGAATAGGGAAGGCATCAAGAGACCGAAAATTACTGAATTAGAGTGTCTACCATCTACAAGTGATTCTAATCAAGCGTGTGGAAATGATGATCTGCGAGAACTTCGTGATTTGGAGAAACTCAACAAGGTATTAAAGTATAAAATGGAAGCCAGTGATACTGATAGTGATGACGGTGAATTAATAACAGGCTTGTAA
Protein Sequence
MDDKEDLLKIKKALNDYTQDEFICDEFINYDEECDEDDLVVDSDPESAIIDLHESELTTVSTYDTLPKLKPNEKSVIDSCTDPELKNLLILNRQKHAHLLEFYNKIRNIVYVTQSNLKTKYTLIKDRIEEKKQLQHCPLTKLGAPYFKDKHLYPAPVNSDVIKKRKNNEITIYDLSVSTKWKDTECIKLKGAVKTSYSINMQKDLLNKINTLQLSETSSVDEINELREKLEYLRSNENIIPPKDSDEFIDWNRISEVFLNSKHSALECRSFWHIYLRPSINKSPWSEDEIQRLTNIVKKNNYQNWENIAQELNTDRSAFTAAYHYYSNLHKKYKRGEFTKQEDTLLRNIVSRYKSGNYIPWNKVADRFKDRSRHQLFYRYTYYLKSSNLNRSRFTEAEDILLLILVEKFGRNFTKCSEYFPQRSQMQLKARYNTNLVKALKKGSFTREEDRIIWEYVMENERNSNKWSELAKKLDRCRGQIRQRYSIIKHYLNGGEDRKLEDVPSRRHLNTTENENCFGFLRHMADQFKDRNIPTLPAIEKLLLERKNNVVDTVTESEGDEDLQSIDDLLAEFFFNSVKLGPSGNSFNAIDLNTVTDTVQTIVNLLQVSFVLPKDYQNNPNLDDLDKSILTNLVKYRMVHGQPLLVSYKSENNVNSNELVPPNLNTLIGLRGLLINHRLYKENTKHFLTEISWTVEKCIKEMSSKRKVQFKIKSDIFFKRFFTLFKWPSILTLQKPGNSLLNALENGSKTSRPKMKTYGSRKRALMPDVANKNREGIKRPKITELECLPSTSDSNQACGNDDLRELRDLEKLNKVLKYKMEASDTDSDDGELITGL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-