Basic Information

Insect: Sialis lutaria
Gene Symbol: Glis3
Assembly: GCA_949319165.1
Location: OX439239.1:17623912-17630073[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.016 0.86 10.4 0.2 2 23 459 483 458 483 0.90

2 5 0.42 23 5.9 0.4 3 23 494 519 492 519 0.80

3 5 6.7e-06 0.00036 21.0 0.4 2 23 526 549 526 549 0.96

4 5 8.9e-05 0.0048 17.5 2.6 1 23 555 579 555 579 0.98

5 5 3.5e-05 0.0019 18.8 0.7 1 23 585 609 585 609 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.016	0.86	10.4	0.2	2	23	459	483	458	483	0.90
2	5	0.42	23	5.9	0.4	3	23	494	519	492	519	0.80
3	5	6.7e-06	0.00036	21.0	0.4	2	23	526	549	526	549	0.96
4	5	8.9e-05	0.0048	17.5	2.6	1	23	555	579	555	579	0.98
5	5	3.5e-05	0.0019	18.8	0.7	1	23	585	609	585	609	0.95

Sequence Information

Coding Sequence: ATGATATTTACATCTTACATCAATCCTGCCGTGACAACTTTGCCCGACATTACCCCACAGAACAGTCCAACAATGACAACGTTCGCGCAAACTTTTGATCAGCTCACACCCACTACTGTCGAGAACCTCAACTATTTCGACTTCCAACAAGTAAATCCTCAGGAGTACTATCCAGTTAATGATAATTTTATCAACAATGCAAAACTTACTCAAAGATATGATTCAAAAACAAAAGACACGTATTATGTAACAATGAAAACAAATGATAACCATTTTCAAAACAATGGAATGTGTGTGTACAACAATGGAACGGTTGATAATCATAAAGTAGTTGATAACTGTCAAACAAATTACACCAGTGATTATCAAAATGTTCCAATTATGAATAAAACATCTCCAAATATATCTATTGAAGAgcaattaaaattagaaaaacattTCTCGAATGCCTTTTTTGATTCGGCTAATATAGACTGGTATCAAGAAAAtacaaatgaattatttaatgatataGAAAATTCTATTGAAAAACCATCTGGAAATAATGAAAATCAGAAATGTATAGAGGAAAACAACACGCAGAATCCATTTTTTATTCCACCACCATTCAAGCCATTTTCATCACCAACTTATTCTGAAATTTCTCTATCGGAATTATCTCCATTAAATCTAAATGAAAACTCAAGCGAAAATTTACCTGATAGTATATCAGACAGTTTTGATCTGatagaagaaaatttaaaattcgagACAGATCTATCGAATAACAGTTTCGATTTCGATGTTTTCTCAACAGAAGACTTAGATCTTCCAGAAGACGAAGTAAGTGTGAACTTGAATGACTGTGATGAAAATAGCGAACTAGAGAAGTTACCTTCATTCGAGAATAATTTCAGTTCTAAAATTGGTGTTCAAAGCTGCgaattttcaaattacattCGTAACTGTCCATCGACAAGTTTGCAATGTTATAGCACCGATACCGACAACAAAGCAGCAACATATGGACATCTACTATCTGTTAAACCAGTAAACAATAACTTATCAGCAGTTAGTTCAAACTACACATTGGAAGAAACAAATCAATCAAACAATCAAACATGTTTGAGCAGTAATCAAGTTGTATTAACGCAAAAAGAAGCGATCCTAGGGACATCTAGTGACCCGTTTCTAAGTTCGTGTACAAACAATCGAACGATTGATAATTTTACTGCTAGTTTCAATAGTCAGTTGTTAAATATTGAGTATTGTGAAAATACAAGGACTAATTTGAATGTGTCTATGGATAATGTCCAAAGTGCAGAGACGAGTGCCGACGTTTCGGAGAGTGAAGAGGAGTGTGATGATGCGCCGATAACTAGTTCGGGAAATCTGCAGTGCAAATGGGCCGCGTGTTATCAAATATTCTCTGATCAGACTAGCCTTGTTAAACATATAGAGAAGATGCACGTGGAAGTTAGAAAAGgAGATGAATTTTCCTGCTACTGGGAAAATTGTCCAAGGAAAACGAAGCCATTCAATGCCAGATACAAACTACTTATTCATATGCGAGTCCATAGCGGAGAAAAACCGAACAAATGTCcgTGGCCGACGTGTTCGAAGGCGTTTTCGAGACTGGAGAATTTGAAGATCCACCAGAGAAGTCATACAGGGGAACGGCCGTACAGATGCCAGCACGCTGGGTGTAGGAAAGCATTCAGTAATAGCTCCGATCGCGCGAAGCACCAACGCACTCACGTAGACACGaAACCATATGCCTGTCAAGTATTAAATTGCAACAAGCGATACACGGATCCAAGCAGTCTGCGAAAACACGTGAAAAACCATTCGTCAAGAGATCAAGCAATCTTGAAAAAGCGGCAAACAACTCAACCACCGCAACAAAGAAAACAAGTGACGAACTACGTAGAATATAAAGATCATAATTATATTACCTCGAAAAACGAGAATTTTGTAAACGTTTCCGATTCAAGGCAGAATAGAATaaaaatggatttaaaaaataaaatcataaacgATAAAGCGAGAAAATTGAAGGAACTGGAAAACAAGCAATTTATAGAAATGAATAGAGAACAGGTGACTGAAGAGGCGTTTAATGGTAATAGGGAGGTTGAAATTTTCGTTCAAGATATTGAAGAATTGAAATTCGAAAATGCAATTTTTGTAGAAGAGAGTGAATACGTTCCTTATGAAACAATTGGAAGATTTTTTAGTGGAGGATTTGGTGAGTACCTACCTATAGTTTTAAGATTGCACTCAGCGCTCTAA
Protein Sequence: MIFTSYINPAVTTLPDITPQNSPTMTTFAQTFDQLTPTTVENLNYFDFQQVNPQEYYPVNDNFINNAKLTQRYDSKTKDTYYVTMKTNDNHFQNNGMCVYNNGTVDNHKVVDNCQTNYTSDYQNVPIMNKTSPNISIEEQLKLEKHFSNAFFDSANIDWYQENTNELFNDIENSIEKPSGNNENQKCIEENNTQNPFFIPPPFKPFSSPTYSEISLSELSPLNLNENSSENLPDSISDSFDLIEENLKFETDLSNNSFDFDVFSTEDLDLPEDEVSVNLNDCDENSELEKLPSFENNFSSKIGVQSCEFSNYIRNCPSTSLQCYSTDTDNKAATYGHLLSVKPVNNNLSAVSSNYTLEETNQSNNQTCLSSNQVVLTQKEAILGTSSDPFLSSCTNNRTIDNFTASFNSQLLNIEYCENTRTNLNVSMDNVQSAETSADVSESEEECDDAPITSSGNLQCKWAACYQIFSDQTSLVKHIEKMHVEVRKGDEFSCYWENCPRKTKPFNARYKLLIHMRVHSGEKPNKCPWPTCSKAFSRLENLKIHQRSHTGERPYRCQHAGCRKAFSNSSDRAKHQRTHVDTKPYACQVLNCNKRYTDPSSLRKHVKNHSSRDQAILKKRQTTQPPQQRKQVTNYVEYKDHNYITSKNENFVNVSDSRQNRIKMDLKNKIINDKARKLKELENKQFIEMNREQVTEEAFNGNREVEIFVQDIEELKFENAIFVEESEYVPYETIGRFFSGGFGEYLPIVLRLHSAL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01343507;
90% Identity: iTF_01343507;
80% Identity: -