Basic Information

Insect: Sialis lutaria
Gene Symbol: -
Assembly: GCA_949319165.1
Location: OX439238.1:3158243-3158908[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 3.7 2e+02 3.0 0.4 6 23 2 19 1 19 0.89

2 8 0.00013 0.0072 17.0 3.0 1 23 26 48 26 48 0.99

3 8 2.3e-05 0.0013 19.3 0.8 2 23 55 76 54 76 0.97

4 8 0.00047 0.025 15.2 0.1 2 23 85 107 84 107 0.94

5 8 0.00034 0.019 15.7 0.4 2 23 116 136 115 136 0.96

6 8 8.8e-05 0.0048 17.5 4.2 1 23 142 164 142 164 0.99

7 8 2.8e-06 0.00015 22.2 2.3 1 23 170 192 170 192 0.98

8 8 8.4e-07 4.6e-05 23.9 1.1 1 23 198 220 198 220 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	3.7	2e+02	3.0	0.4	6	23	2	19	1	19	0.89
2	8	0.00013	0.0072	17.0	3.0	1	23	26	48	26	48	0.99
3	8	2.3e-05	0.0013	19.3	0.8	2	23	55	76	54	76	0.97
4	8	0.00047	0.025	15.2	0.1	2	23	85	107	84	107	0.94
5	8	0.00034	0.019	15.7	0.4	2	23	116	136	115	136	0.96
6	8	8.8e-05	0.0048	17.5	4.2	1	23	142	164	142	164	0.99
7	8	2.8e-06	0.00015	22.2	2.3	1	23	170	192	170	192	0.98
8	8	8.4e-07	4.6e-05	23.9	1.1	1	23	198	220	198	220	0.99

Sequence Information

Coding Sequence: ATGTGCAGTTACTTCACGTACGTTAAAGAATGTTTAAAAGTACACATCGGAAGACATGGTCTAAATGGAAAAGAATACAAATGTACACAATGTTTTAAAGTATACTTTCTTGAGAGAGATTTAAAACGACATATGCTCAAACATCAAGTTTCAGTTCCCGTACCTTGCCCTATTTGTTCTAAAATATGTCGTGATAAGTTAAACTTAATAGAACATAAAAGGACTCATAAAAGAAAATCGTTAAGTAAATTGATGTGTGACATATGCGGTCTACAACTATCGACTAAACAGAGTTTAGAAAGTCATATAGCGATAACACATTCTGATAGTGTAAAAAAACTCGTAAAGTGTgatgtttgtaataaaacaatACGCCCTTCAAATTTATCTCGTCATAAATTAATTCACAGCGGAgatatgaaatttaaatgtaacatttgtagtaaatattttttgactaAGTCTACTCTGAAGTTGCACAAAAGGACGCATGAAGGAGAAAAgaaatttatatgtaatatttgtGAGAGGCATTTTGCAATAAAGTCATCACTCACGAGACATCTTAGGAGACATATCGGTTATACGCCATATCAATGTCATATTTGCACTAAAGCATTTGTAGCAAAAGATTtgttaaatattcatttaaaaacgcATAAATGA
Protein Sequence: MCSYFTYVKECLKVHIGRHGLNGKEYKCTQCFKVYFLERDLKRHMLKHQVSVPVPCPICSKICRDKLNLIEHKRTHKRKSLSKLMCDICGLQLSTKQSLESHIAITHSDSVKKLVKCDVCNKTIRPSNLSRHKLIHSGDMKFKCNICSKYFLTKSTLKLHKRTHEGEKKFICNICERHFAIKSSLTRHLRRHIGYTPYQCHICTKAFVAKDLLNIHLKTHK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01343416;
90% Identity: iTF_01343416;
80% Identity: -