Slut014814.1
Basic Information
- Insect
- Sialis lutaria
- Gene Symbol
- -
- Assembly
- GCA_949319165.1
- Location
- OX439242.1:385047-387689[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.0031 0.17 12.6 6.7 1 23 162 184 162 184 0.98 2 21 0.22 12 6.8 6.3 1 23 275 297 275 297 0.99 3 21 0.0049 0.27 12.0 0.3 1 23 304 326 304 326 0.96 4 21 0.00021 0.011 16.3 0.8 1 23 332 354 332 354 0.99 5 21 0.053 2.9 8.8 0.8 1 23 360 382 360 382 0.98 6 21 0.00022 0.012 16.3 1.5 1 23 388 410 388 410 0.98 7 21 9.6 5.2e+02 1.7 0.1 1 20 416 435 416 438 0.77 8 21 0.011 0.57 11.0 0.2 1 23 444 466 444 466 0.96 9 21 8.8 4.8e+02 1.8 0.5 1 20 472 491 472 494 0.84 10 21 0.0032 0.17 12.6 0.3 1 23 500 522 500 522 0.97 11 21 1.1 62 4.6 0.4 1 23 528 550 528 550 0.93 12 21 0.0048 0.26 12.1 0.3 1 23 556 578 556 578 0.97 13 21 6.8 3.7e+02 2.1 0.3 1 23 584 606 584 606 0.83 14 21 0.00039 0.021 15.5 0.1 1 23 612 634 612 634 0.97 15 21 9.4 5.1e+02 1.7 0.3 1 23 640 662 640 662 0.83 16 21 0.00063 0.034 14.8 0.2 1 23 668 690 668 690 0.97 17 21 4.5 2.4e+02 2.7 0.1 1 20 696 715 696 717 0.85 18 21 0.27 15 6.5 0.4 1 23 752 774 752 774 0.95 19 21 9.5 5.2e+02 1.7 0.5 1 19 780 798 780 800 0.76 20 21 5.4e-05 0.0029 18.2 0.5 1 23 804 826 804 826 0.96 21 21 0.058 3.1 8.6 2.6 1 21 840 860 840 862 0.95
Sequence Information
- Coding Sequence
- atgtcTGGGTTTAACATTCAAATAAAAGAAGAGAGAGCAGAAGCAAAGGTTCTAATTACAAATGATAATCAACCTATAAATGACAATATTAAAGAAGAACTAGACCCTTATGATAGCAATGTTAATTCGGTTAATTCTACAACATTATTTcctttatattttaaagaagAGCCAGAAGAACTAACAATTGAAGATTACAATTGGCTTGATGATGTGAAAGTTGAGTTACCGAGAGAAAATTTTTGCAATGAAAAAATCTACAAAGAACTAAATTCTGCTGATAACAGTTTGATTTCAAAGAATACTTTTATTCAAGAAAGTATAAATGGAAATGATAGTATTAAGCAAGAATATGAAGAAAAAGAAATTCATTTtaacatagaaaataaaaatatcaataatacaaATGTAGAAGtgaaattaaataacatttttcaatGCAGAGTCaaattaataagaaataaatattataacagaACGTATTACGTTTGTAAATATTGCCACAAATTATTTCAACAAAGAAAACATATGCAAGAACATTTACTAACTCatgaaagtaaattaaataatacaatcaaCGTTACTGATTATATTTGGCTTGACAACGTGAAAGTTGAGTTACCGAAAGATGATTCAACGAATATGTTTTTTCAAGAGAGTCTATATGAAAACGATAATATCAAGCACGAATATGAAGAAAAATACTTTACATGCATCAATAATCTTGAAGTAAATCAACGTTCTAGCTGTGACGTCAAGCAAGAAAGTATCAAGAATTTTCAAGAATgcaataaatctaaaaaacgTGCAAAACGAAAACCCTATAAATGCAAACACTGcgaatacaaaacaaataaaagaattCTTATAAACCATCATCTGATGACACATTCAGACGTGGCGAGACCTTATCTGTGCGACACATGTGACTACAGAGCTATAAGCAAAAACAAACTTGAAATACATCAACGCATCCATTCCGACGAACGCCCGTTTAAATGcaaccagtgtgaatacagcGCCAAGCAGAAAAGCGCTTTATCCTCGCACCTTATCACACATTCACGCGTAAAAGCTTACACGTGTAACCAATGCAACTTTAAAGCCACATCGGAACTTATGTACGTAAGACATATACTCACTCACACACATAACTACCGGTTTAAATGtaaccagtgtgaatacagcGCTCGATACAAAGCTCAATTAAATAAACATCTGATGTCACACTCACGTCCGAAACCGTACGCGTGTGATATGTGCGATTATAAATCTGACGCCATAAGTAGACTCGTAGCACATAAAGGTCTCCATGCTAACGTACGCCCTTTTATATGCAGCCAGTGTGGATTCAGTGCAGAGAAAAAAGCCGATTTGAATACACATACGATGGAACATGTACGTTTAAAACCCCACGCATGTGATACGTGCGACTACAGAACTAACGCCATAAGTAGACTTATAGCGCATAAAGGTTTTCACGCTAACATACGCCCTTTTATATGTAACCAATGTGGATTCAGTGCAGAGAAAAAGGCCGATTTTAATACGCATATGATGGAACATAAACGTTTAAAACCCCACGCATGTGATATGTGTGACTACAGAACTAACGCAATTAGTAGACTTATAGCACATAAAAGTATTCATGCTAACGTACGCCCTTTTATATGTAGCCAATGTGGATTCAGTGCAGAGAAAAAAGCCGATTTTAATACACATATGATGGAACATGTACGTTTAAAATCGCATGCGTGTGATATGTGTGACTACAGAACTAACGCTATAAGTAGACTCGTAGCGCATAAAGGTCTCCACGCCAACGTACGCCCTTTTATATGTAACCAATGTGGATTCAGTGCAGAGCAAAAAGCCGATTTGAATACACATATGATGGAACATAAACGTTTAAAACCCCACGCATGTGATACGTGCGATTATAGAACTAACGCTATAAGTAGACTCGTAGCGCATAAAGGTCTCCACGCTAACGTACGCCCTTTTATATGCAGCCAGTGTGGATTCAGTGCAGAGAAAAAGGCGGATTTGAATACACATATGATGGTGCATAAACGTTTAAAACCCCACGCATGTGATAAGTGCGACTACAGAACTAACGCAATTAGTAGACTTATAGCGCATAAAAGTGTTTATGCTAACGTATGCCCTTTTATTCGTAAACAGTGGGGATCCAGTGCAAAGAATAGAGCCGGTTTTGATGCGCATGTGATGGAGCATAAACGTTTAAATCCTCATGCGTGTGATTTGTGTGACTACAGAACTAACGCCGTTAGTGAACTTGTAGATCATAAAAGACTTCATATTGATGTACGCCCTTTCATATGTAATCAGTGTGGATTCAGTGCAGAGAATGAAGTGGATTTTGATATGCATTCGTGTTTAAAACCCTATTTGTGTGATGTATGTGGTTATAGTACTAAAACTAATAGTGAATTTGTAGAGCATCAACGTTCACACACTAATGAAAATCTGAATAATACTTTGAGTTTAAAACTGTATAAATGTGATGTATGTAACTTTAGAACTGAATATAGTGAACAACTTATATCTCATCAGATGTGCCATTTGGATTTTCATAAAAAGACACATAGTATAATTAATGTCGATTTGCCACCCATctga
- Protein Sequence
- MSGFNIQIKEERAEAKVLITNDNQPINDNIKEELDPYDSNVNSVNSTTLFPLYFKEEPEELTIEDYNWLDDVKVELPRENFCNEKIYKELNSADNSLISKNTFIQESINGNDSIKQEYEEKEIHFNIENKNINNTNVEVKLNNIFQCRVKLIRNKYYNRTYYVCKYCHKLFQQRKHMQEHLLTHESKLNNTINVTDYIWLDNVKVELPKDDSTNMFFQESLYENDNIKHEYEEKYFTCINNLEVNQRSSCDVKQESIKNFQECNKSKKRAKRKPYKCKHCEYKTNKRILINHHLMTHSDVARPYLCDTCDYRAISKNKLEIHQRIHSDERPFKCNQCEYSAKQKSALSSHLITHSRVKAYTCNQCNFKATSELMYVRHILTHTHNYRFKCNQCEYSARYKAQLNKHLMSHSRPKPYACDMCDYKSDAISRLVAHKGLHANVRPFICSQCGFSAEKKADLNTHTMEHVRLKPHACDTCDYRTNAISRLIAHKGFHANIRPFICNQCGFSAEKKADFNTHMMEHKRLKPHACDMCDYRTNAISRLIAHKSIHANVRPFICSQCGFSAEKKADFNTHMMEHVRLKSHACDMCDYRTNAISRLVAHKGLHANVRPFICNQCGFSAEQKADLNTHMMEHKRLKPHACDTCDYRTNAISRLVAHKGLHANVRPFICSQCGFSAEKKADLNTHMMVHKRLKPHACDKCDYRTNAISRLIAHKSVYANVCPFIRKQWGSSAKNRAGFDAHVMEHKRLNPHACDLCDYRTNAVSELVDHKRLHIDVRPFICNQCGFSAENEVDFDMHSCLKPYLCDVCGYSTKTNSEFVEHQRSHTNENLNNTLSLKLYKCDVCNFRTEYSEQLISHQMCHLDFHKKTHSIINVDLPPI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -