Slut013227.1
Basic Information
- Insect
- Sialis lutaria
- Gene Symbol
- -
- Assembly
- GCA_949319165.1
- Location
- OX439240.1:25704151-25706109[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00054 0.029 15.0 0.7 1 23 107 129 107 129 0.96 2 17 4e-05 0.0022 18.6 1.9 1 23 169 192 169 192 0.97 3 17 0.0025 0.13 13.0 4.3 1 23 198 220 198 220 0.98 4 17 0.00014 0.0077 16.9 3.4 1 23 226 248 226 248 0.98 5 17 0.094 5.1 8.0 2.1 1 20 254 273 254 276 0.93 6 17 0.0075 0.41 11.4 2.8 1 23 310 333 310 333 0.98 7 17 0.00089 0.048 14.4 2.0 1 23 339 361 339 361 0.98 8 17 0.00087 0.047 14.4 7.0 1 23 367 389 367 389 0.98 9 17 0.00084 0.046 14.4 3.0 1 23 395 417 395 417 0.98 10 17 0.0087 0.47 11.2 1.6 1 23 423 445 423 445 0.97 11 17 0.00014 0.0078 16.8 0.9 1 23 451 474 451 474 0.97 12 17 0.021 1.1 10.0 3.6 1 23 480 502 480 502 0.97 13 17 0.00035 0.019 15.6 2.4 1 23 508 530 508 530 0.98 14 17 0.032 1.7 9.5 3.8 1 23 535 557 535 557 0.98 15 17 0.017 0.91 10.3 1.9 1 23 563 585 563 585 0.97 16 17 0.00036 0.019 15.6 1.6 1 23 591 614 591 614 0.98 17 17 0.0027 0.15 12.8 1.8 1 23 620 642 620 642 0.98
Sequence Information
- Coding Sequence
- atgattaaatcagAAGAACCCAATATATGTGATAATTTACCAATATCCAGTGACCATATTAtcgataaaataacaataactgACAGCCAATTTATTGGTGAAAAtggatacataaatataaatgacgtGAAGATAGAAAACATCGAATACGAAATTTTAAACGAAGAAAAACTACTCGAGTGCaaagaagatttaaaaaaacaattagaaCATTTAACAATAGATACATCTATAAATGAAATAGCATCAACATTTGACATCCACCATTATCTAAACTGTACAGTAAGATTAGTAAAACATAATTACAACCAAATccaatatgtatgtaatgtatgcGATCAGTTATATTCAAAAAAGGAATCTTTAGAAAAGCACAAAATTCAACACAAATCTAAACAAAGACACCACTCCGATGATGGCAAACGTTTCAAATGTGATTACAgaacaaatagaaatataattttaataagacaCAAGACAATACATACAACAAGTGACCGATCATTCAAGTGCGATCAGTGCGAATATAGCAGCACAAGAAAAGATAGTTTAAAAACACACCAACAAAGCGTACATTCAAAAGAACGACCCTTCAAATGCGACAAATGTGATTACAGAAGCTTTCAAAAAAGGACTTTGAAATTACATCGAATGACTCATACCGGCGAACATCCTTACAAATGTAACCAATGCGATTACAGTTGTATTCAAAACGGTAGTTTTAAACTACATATGATGAACCATAAGAACGAACATCCTTACAAATGTGATCAGTGTAAATACAGCACCGCATCGAAATATAGATTCAAAATTCACAAGCCAATACATACTAAACATCTACCGTTTATGTGCGAGCAATGTAATTGTAGCACAGAAGGAAATACGTGTTTAAAAGGACACAAGACAATACTTAAATCTGAACAATCGTTCAAGTGCGATCAGTGCGAATATAGCAGCGTTATAAAACATAGTTTAAAAACACACCAACAACGAGTACACTTTAACGTACAACCTTTCCAATGCGAACAATGCGATTACAAAAGCTATCAAAGAACTGCTTTGAAATTGCATCGGATGACACACACCGGCGAACGTCCTCACAAGTGTGATCAATGCAATTACAGCTGTATTCATAAAGatagtttaaaaatacatataatgaaGCATAAGAACGAACGTCCTTACAAGTGTGAACAGTGCGAATACAGCACTGCATCGAAATCTAGCTTTAAAACTCACAAATTAAAACATACTAAAGACCTACAGTTTAAGTGCGATGAATGCGATTACAGTACACAtggaaatgtatatttaataagacaCAAAACAATACATACGACTGAACGAACTTTCAAGTGCGATCAGTGCGAGTTTAGCAGCGCAAGAAAAGATAGTTTAAAATCACACCAACGAGGAGTACACTCTAACGtaagaccatttaaatgcgagcaTTGTGATTACAGAAGCTTTGGAAGAAATGCTTTGAAATACCATCAAATGAGTCATACCGGCGAACGTCCTTACAAATGTAACCTATGTAATTACAGCTGTATTCAAAAAGTTACgctaaaattacatataataaaccatAATAAACGTCCTTACAAATGTGATCAGTGCAAATACAAAACTGTATCGAAATCTAAAATCAAAAGTCATAAGTTAAGACATTCTAAAGACCTACCGTTTAAATGCGAACAGTGCGATTACAGTACGTTTCTAAATACGTATTTGATAAGACACAAAACAATACATACAACTGAACGATCTTTTAAATGTGATCGATGTAAGTTTACCAGCGTAAGAAATGATAGTTTAAAAGCACACCAACAAAGAGTACACTCTAAAGTAAGACCCTTTAAGTgcgataaatgtaattatagtAGCTATGGAAGAAATGAATTGAAATTGCATCTAATGAGGCATACCGGAGAACGTCTTTACAAATGTGACCAGTAG
- Protein Sequence
- MIKSEEPNICDNLPISSDHIIDKITITDSQFIGENGYININDVKIENIEYEILNEEKLLECKEDLKKQLEHLTIDTSINEIASTFDIHHYLNCTVRLVKHNYNQIQYVCNVCDQLYSKKESLEKHKIQHKSKQRHHSDDGKRFKCDYRTNRNIILIRHKTIHTTSDRSFKCDQCEYSSTRKDSLKTHQQSVHSKERPFKCDKCDYRSFQKRTLKLHRMTHTGEHPYKCNQCDYSCIQNGSFKLHMMNHKNEHPYKCDQCKYSTASKYRFKIHKPIHTKHLPFMCEQCNCSTEGNTCLKGHKTILKSEQSFKCDQCEYSSVIKHSLKTHQQRVHFNVQPFQCEQCDYKSYQRTALKLHRMTHTGERPHKCDQCNYSCIHKDSLKIHIMKHKNERPYKCEQCEYSTASKSSFKTHKLKHTKDLQFKCDECDYSTHGNVYLIRHKTIHTTERTFKCDQCEFSSARKDSLKSHQRGVHSNVRPFKCEHCDYRSFGRNALKYHQMSHTGERPYKCNLCNYSCIQKVTLKLHIINHNKRPYKCDQCKYKTVSKSKIKSHKLRHSKDLPFKCEQCDYSTFLNTYLIRHKTIHTTERSFKCDRCKFTSVRNDSLKAHQQRVHSKVRPFKCDKCNYSSYGRNELKLHLMRHTGERLYKCDQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -