Slut001511.1
Basic Information
- Insect
- Sialis lutaria
- Gene Symbol
- -
- Assembly
- GCA_949319165.1
- Location
- OX439231.1:33622455-33627137[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.053 2.9 8.8 0.4 1 21 508 528 508 529 0.92 2 22 0.0016 0.089 13.5 0.5 1 23 533 555 533 555 0.98 3 22 0.11 5.7 7.8 0.4 3 22 595 614 594 614 0.90 4 22 0.022 1.2 10.0 1.0 1 21 622 642 622 643 0.96 5 22 0.002 0.11 13.3 1.1 2 19 659 676 658 676 0.97 6 22 0.00068 0.037 14.7 0.8 1 21 687 707 687 708 0.96 7 22 1.9 1e+02 3.9 0.1 2 13 734 745 733 749 0.89 8 22 5.8 3.1e+02 2.4 3.7 1 21 761 781 761 782 0.88 9 22 0.069 3.7 8.4 3.9 2 19 859 876 859 879 0.95 10 22 0.0048 0.26 12.1 2.5 1 21 885 905 885 906 0.93 11 22 0.0068 0.37 11.6 1.7 1 23 926 950 926 950 0.92 12 22 0.013 0.71 10.7 3.3 1 22 955 976 955 976 0.96 13 22 1.3 70 4.4 0.1 1 22 996 1017 996 1017 0.94 14 22 0.00059 0.032 14.9 0.9 1 21 1025 1045 1025 1046 0.94 15 22 0.0011 0.058 14.1 0.2 2 20 1072 1090 1071 1092 0.95 16 22 0.0097 0.52 11.1 2.1 1 21 1100 1120 1100 1121 0.96 17 22 0.0034 0.19 12.5 1.9 1 22 1175 1196 1175 1196 0.96 18 22 6.1e-05 0.0033 18.0 1.0 2 22 1211 1231 1210 1231 0.94 19 22 0.29 16 6.4 5.4 1 22 1239 1260 1239 1260 0.96 20 22 0.0016 0.086 13.6 0.3 2 21 1282 1301 1281 1302 0.95 21 22 0.002 0.11 13.2 1.1 1 23 1309 1331 1309 1331 0.95 22 22 0.0028 0.15 12.8 5.7 1 23 1340 1363 1340 1363 0.97
Sequence Information
- Coding Sequence
- ATGGAAGAAATGTTTGAAATTGTTAATATTGAAAGTATCAAAAAAGAACCTATTACTGGCACTGATACTGCAAATAGTTTTTGCAATGAAGGAAATGAAAACGAATTATGTGAAACCGATCCAATCCAACTTAACCCAGATACTGCATTAAATTTAAACTCAGAAAATGAAGTACGTCAAGTAACTGATTCCGAAAAAGAAATTCGCTTATGTGAGTTTGAAAAACAAACTCTAAGTAACTCTAATGACAGCGAATTATGTGAAACTGATCCAATCGAACTTCCCTCAGATACTGCATTAAATTTAAACTCAGAAAACGAAGTACGCCAAGTAACTGATTCCGAAAAAGAAATTCGCTTCTGTGAGTTTGAAAAACAAACTCTAAGTAACTGCAATGACAGCGAATTATGTGAAACTGATCCAATCCAACTTCCCTCAGATACTGCATTAAATTTAAACTCAGAAAATGAAGTACGTCAAGTAACTGATTCCGAAAAAGAAATTCGCTTCTGTGAGTTTGAAAAACAAACTCTAAGTAACTGCAATGACAGCGAATTATGTGAAACTGATCCAATCCAACTTCCCTTAGATACTGCATTAAATTTAAACCCAGAAAATATTGAACTTCGAGTTACTGATTCCGAAGAAGAAATTAGTTTAAATGATTCCGAAAAACAAATTCAAGTTAATGATTCTGAAAAACAAATTCAAGTTATTGATTCCGAAGAGGAAATTCGATTAAgtgattttgaaaaacaaattcaAGTTGATGATTCTGACGAAGAAATTCAATTAAAcgattttgaaaaacaaattcaaaataatgattCTGTAAAAGAAATTCTTAACAATGGTTCTGAACATATAAAAACTGAACCCAAAGAACAGTTAGATGAAAGTTTAAGTTATTCACAAAGTGATGAAGAACCAACTGAGAAAAGAACACTTCGGAGTACTTCAACACCTGGTAAAAGAAGTCTTAGACAAGATTCATGGAGTGGTGAtgaaaaaacagaaaaaagaaCACTTCGAAGTCAGtcaatatttagtaataaaaaactaaaatttgatTCATCGAGCGATGATGAAATATCTGAGAGAAATTCAGCACGTAGTAAAAGAAATCTTAGACCTGATTCATCTAGCAATAAACAAACATCTAAGAAAAGGATACTTCGGAGAAATTCAATGAGTAGTAAAAGTCTTAGATTAGATTTATGGAATGATGAAAAAGAAACACTTCAAAGTGATTCAGAATGTAGTAATAAAAGACTCCGATTAAGTTCATTGAGTGATGAAGAAATATCTGAGAATAAATCTCTCCCAAGTAATTCATTAAGTAGTAAAAGAACACTAAGAAAAAATGCATCGATGTATTACGAGGAAAGTGCAAGTAGTGAAGATAACTATAACATTAAACTTCTACCTAAAAAGATATCTACTTTTGAAATGGCAAGTAGCAGCAAATATAATACCAATATTACAaatacacaacaaacaaacgaGCCTAGAAAGTTTAATTATGAATGCGaggaatgtaataaaaaatttcttttCGAAAGCggtttaatacaacataaaaaaaactattcaacATATAACTGCAGCTTATGTCATATAACGTTTCCTGAAAGAAACGGATTAGAAATGCACATTCGAGAACATAACAACCTacctgaaaatttaaatttaataaccgCAAGAAATGAACAAAAAGTAGACATTTCAAACAACGTAGATGAAATACCTAAAAAGAGAGAAATGGAACAACCGCCTAACGAATGTATAAAGTGTGACAAAGTATTTCAATCTAAAGAGAAATATTTGAACCACTGGAGAACTTACATAGACAGAAACGACATATACAAATGTCCtaattgtaatataaaatatcatgaAAATAGGTTCTTAAAATCACATATGATGGCCTGCAGTGTTACTCAaaggaatacaaaaaaaaacaaagtagaTACCAAATGTGTAAAGTGCgataagatatttaaaaataaacagaatTACATACGACACTGCGTAACATACATGGGTATGGATGAAATCTACCAATGTCCCAATTGTGATGAGAAATTCCACGAGAACAAATACCTTCAAATGCATTTGAGAGTTTGTAGTGGTAGTAAGAATAACACAAATCAGATCAATGAAGTTGAAAAGCAAGACGAAAAGAATTCTCATACTAATAAATGTACAATCTGCGaagaaatattttcaactaGACTTTCTTATTTGTGTCACTGTGAGGCGTACATGGGCAAAGAAGTTCATACGTGTTCTAAATGTGATATGAAATTCCATGAATACAGGCGACTAGAATCACATTCAAAGAAATGTAGTGGCAAAATAAATACAGAAAATGTGGATACAATAtcaaaaaagaaagaaataaaGATAAAGAAAGAGCTTATTTTGAACAAATGTTTCAAATGTGAAAAAGTATTACCAAGTCAAAAAAAGCATATGAAGACTTGCAATGATGCAGCAAAGACAAATACGGAAAGGTTGGTTAATAGAGTGAAAAAATTCAAGCGAGGAAATAAATCCCAATTTAATTCTCCGAGATGTGAAATATGCAGAAAATTATTCTCATCTAAACACTCTCTTTTACGCCACTGCAATACGTACGGCAAAGAAGTGCATGCATGTTCTAAGTGTGGAAAGAAATTCCATGAATCCAAGTATCTCAAAATACATCAGAATGACTGTCTTGcaacaattaataatattcaGAATGAgaccataaaaaataaaaatgtgcaaTTTGAATGTGTCAAGTGTGAAAGGATATTTTCACACAGGAATGGTTATATTATTCACATGAACTCGTACAAGCACACAGATGAAATATATGAATGTTCCAATTGCACTAAAAAATTTCACaaggaaaattatttaaaagatcATTTGAGGAAATGTGTTGGTTCTATaaatacacatttaaaaaataatgaagtaAAGAAACTTAATTCTTACAAATGTGTAAAGTGCGAAATGGTAATTGAAGATAAACAATCTTATTTAGACCACATAGAAACTTACAAGGATAAAGACGAGATTTTTGAATGTTCCGACTGCAAAGagaaatttcatgaaaatgaaaatttgaaaaggCATTTAAGTATATGTACTGTAAGAGTCGGTAGAAATACACAAAATGAGATCAATAATGCTAAAGGACATAAAAAACAAGAAGAAAACAAATGTGTAAAGTGCGAAAAAGTGTTTTCACAAAGGGATTCTTATTTGCGTCACTTGGAAGCTTACAAGTACACGGACGATATCTTTGAATGTACAAATTGCACTGAAAAATTTCACGatgaaagatatttaaaaaatcatttaagaCAGTGTGTTGGTACTATAAGAACAGATATTAACACCGAGGCTTGTGAAACTGAAGTAAAGAAACTTCTTTTTGAAAACAAATGTGTAAAGTGCGAGAAGGTTATGGAAAATAGACAATCTTATTTAGATCATATAGAACTTTACAAGGGTCAAGATGAGATCTTTGAATGCTCCAACTGTAGTGAGAAATtccatgaaaacaaaaatttagaaaaacatttaaaaacatgTATTGAAGTAGCCAGCACAACTATtcaaaatgatgaaaataaatgtaCGAAATGTGAAAGGGTATTTTCAAGCAAGCGCAATTTTGAACGTCACATAGAAACATACAAAGGCCGAAATGAAATCTATGAATGTTACAATTGCTTTACGAAATTTcacaattcaaattattttaaatctcATATGAAGAAATGCAGTACTGAAGAGGTTAAAGAACACAAAAATAAAGTAAAGAAGGTTCATTTGCTTTCTACAAAATGTCAAACTTGCGGAAAGGTATTGGCAAATAGAAAATCGTATCTGAGGCACATGCAGGTGTACGCAGATAAAGACATTTATGCTTGTTCTTACTGCGGTCAAAAGTTCCACGAAAAGGCGCTTTTAAAAAGCCATGTTAGCGCTCATACAGGTGTGGTGGAACATGAGTGGTATCACTGCAATATATGCATGAGGAATTTCAAACATAAATATCTATTACAAAGACATTTAGAGACATTGCATtcggtaaatattaaaaaagaattgATAAATGAACCAGCACCTTCATTTATTTGA
- Protein Sequence
- MEEMFEIVNIESIKKEPITGTDTANSFCNEGNENELCETDPIQLNPDTALNLNSENEVRQVTDSEKEIRLCEFEKQTLSNSNDSELCETDPIELPSDTALNLNSENEVRQVTDSEKEIRFCEFEKQTLSNCNDSELCETDPIQLPSDTALNLNSENEVRQVTDSEKEIRFCEFEKQTLSNCNDSELCETDPIQLPLDTALNLNPENIELRVTDSEEEISLNDSEKQIQVNDSEKQIQVIDSEEEIRLSDFEKQIQVDDSDEEIQLNDFEKQIQNNDSVKEILNNGSEHIKTEPKEQLDESLSYSQSDEEPTEKRTLRSTSTPGKRSLRQDSWSGDEKTEKRTLRSQSIFSNKKLKFDSSSDDEISERNSARSKRNLRPDSSSNKQTSKKRILRRNSMSSKSLRLDLWNDEKETLQSDSECSNKRLRLSSLSDEEISENKSLPSNSLSSKRTLRKNASMYYEESASSEDNYNIKLLPKKISTFEMASSSKYNTNITNTQQTNEPRKFNYECEECNKKFLFESGLIQHKKNYSTYNCSLCHITFPERNGLEMHIREHNNLPENLNLITARNEQKVDISNNVDEIPKKREMEQPPNECIKCDKVFQSKEKYLNHWRTYIDRNDIYKCPNCNIKYHENRFLKSHMMACSVTQRNTKKNKVDTKCVKCDKIFKNKQNYIRHCVTYMGMDEIYQCPNCDEKFHENKYLQMHLRVCSGSKNNTNQINEVEKQDEKNSHTNKCTICEEIFSTRLSYLCHCEAYMGKEVHTCSKCDMKFHEYRRLESHSKKCSGKINTENVDTISKKKEIKIKKELILNKCFKCEKVLPSQKKHMKTCNDAAKTNTERLVNRVKKFKRGNKSQFNSPRCEICRKLFSSKHSLLRHCNTYGKEVHACSKCGKKFHESKYLKIHQNDCLATINNIQNETIKNKNVQFECVKCERIFSHRNGYIIHMNSYKHTDEIYECSNCTKKFHKENYLKDHLRKCVGSINTHLKNNEVKKLNSYKCVKCEMVIEDKQSYLDHIETYKDKDEIFECSDCKEKFHENENLKRHLSICTVRVGRNTQNEINNAKGHKKQEENKCVKCEKVFSQRDSYLRHLEAYKYTDDIFECTNCTEKFHDERYLKNHLRQCVGTIRTDINTEACETEVKKLLFENKCVKCEKVMENRQSYLDHIELYKGQDEIFECSNCSEKFHENKNLEKHLKTCIEVASTTIQNDENKCTKCERVFSSKRNFERHIETYKGRNEIYECYNCFTKFHNSNYFKSHMKKCSTEEVKEHKNKVKKVHLLSTKCQTCGKVLANRKSYLRHMQVYADKDIYACSYCGQKFHEKALLKSHVSAHTGVVEHEWYHCNICMRNFKHKYLLQRHLETLHSVNIKKELINEPAPSFI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -