Slut007933.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sialis lutaria
Gene Symbol
-
Assembly
GCA_949319165.1
Location
OX439236.1:6006810-6008495[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 1.7e-05 0.00092 19.8 0.4 1 23 176 198 176 198 0.99
2 14 0.31 17 6.3 0.8 8 23 211 226 204 226 0.80
3 14 8.4 4.6e+02 1.8 0.2 12 22 232 242 231 242 0.89
4 14 0.00049 0.026 15.2 2.7 1 23 249 271 249 271 0.98
5 14 0.00051 0.028 15.1 0.1 1 23 277 299 277 299 0.98
6 14 0.029 1.6 9.6 3.1 1 23 305 327 305 327 0.99
7 14 0.00068 0.037 14.7 0.6 1 23 333 355 333 355 0.98
8 14 0.00018 0.0099 16.5 2.9 1 23 361 383 361 383 0.99
9 14 0.00068 0.037 14.7 0.6 1 23 389 411 389 411 0.98
10 14 8.4e-05 0.0046 17.6 0.5 1 23 417 439 417 439 0.99
11 14 0.0059 0.32 11.8 3.9 1 23 445 467 445 467 0.96
12 14 0.00029 0.016 15.9 0.7 1 23 473 495 473 495 0.99
13 14 0.00022 0.012 16.3 1.2 1 23 501 523 501 523 0.99
14 14 9.6e-05 0.0052 17.4 1.0 1 23 529 551 529 551 0.99

Sequence Information

Coding Sequence
atggctGAGCCtaacatacaaattaaattagaaTCCAAAGAAGAAGTGGTTGAAGCAGTCATTAATTCTACAGAAACatctacatttaaaataaaagaggaGCCAAATGATTCTGACGAATTATCGAATATGTATGTTGAAAAATCTACACGGCTTGACGATGTTAAAGTTAAGTTACCGAGACTAGAAACAGACTATGGTTGCAACTCAAGTAATAATTTCACTAATGAAAACGTAGAAGATTGTTCTAGTTTTTCTAATGATAGCATAGTTTTAATGAATACATGTACTGAAAATACAAGTGAAGATAAAATAATGTCTAATATCAAAGTGAAGCAAGAATTTGGAAAAATAGAATTTATATCATTTCCAAACCTCCAGTTTGCATCAGATGATTCTAATAGTAATGTCAAACAAGAAAATATTAACACAGAGCtcgatataaaacaaaataataaattattccaatgtgaatatagcacCAATCAGGAAAATGATTTGAATTTACATTCAGACAACAAACCCTATACTTGTGATATTTGTGATTATAGAACTGCTCGAAGTGGTAATCTTGTAACACACAAACGTATCCATACAGGCGAGCGTCCATTTAAATGTAACCAGTGGAAATATAGCGCCAGCAAGAAAAATAGTTTGAATACTCATATGAAGACACATTTAGGCAACAAACCCCACAGTAGTAATCTAGTAAAACATAAACGAACTCGTACTGGCGAACGCCCTtataaatgcgaccaatgtgaatatagtgcCAGTCATAAAAGCCGTTTGAATGATCATATGAAGTTACATTTAGGTACCAAACCATATGCATGTGACATGTGTGACTACAGAGCTTCAAACAGTGGTGCACTTGTAACACACAGGCGTTCTCATACTGGCGAAcgtccttttaaatgtgacagaTGTGAGTATAGTGCTCGTCTGAAAAGTTGCTTGGTAGCGCATAAGAAGACACATTCAAGTGAAAAACCTTATGCATGTGACATGTGTGATTACAAAACTTCAAACAGTCGAGGGCTTGTAACTCATAATCGTACCCATACTGGTGAAcgtccttttaaatgtgacagaTGTGAGTATAGTGCTCGTCAGAAAAGTTGCTTGGTAGCGCATATGAAGACACATTCAAGTGAAAAACCTTATGCATGTGACATGTGTGATTATAAAACTTCAAACAGTCGAGGGCTTGTAACTCATAATCGTACCCATACTGGTGAAcgtccttttaaatgtgaccagtgtgaatatagcgCCATTCAGAAAAATAGTTTGAATATTCATATGATGACACATTTAGGCAACAAACCTCATGCATGTGACATTTGTGATTATAGAACTTTACACAGTAGTAATCTTGTAAAACATAAACGAACCCATACTGACGAACGCCCTTACAAATGTGGCCAGTGTGAATATGGTGCTCGGGATAAAAGTCGTTTGAATGATCATATGAAGACACATTCAAATGATAAACCCTATTCATGTGATATTTGTGATTATAAAACTGCACATAGTGGTGTTCTTATAAGACATAAACGAACCCATACTGGCGAACGttcttttaaatgtgaccagtgTGAGTATAGCGCCACTATGAAATGGAATTTAAAAACTCATATGAAGATACATTTAAGTAAAAAGCCCTGTACACTAGGTTCGTAA
Protein Sequence
MAEPNIQIKLESKEEVVEAVINSTETSTFKIKEEPNDSDELSNMYVEKSTRLDDVKVKLPRLETDYGCNSSNNFTNENVEDCSSFSNDSIVLMNTCTENTSEDKIMSNIKVKQEFGKIEFISFPNLQFASDDSNSNVKQENINTELDIKQNNKLFQCEYSTNQENDLNLHSDNKPYTCDICDYRTARSGNLVTHKRIHTGERPFKCNQWKYSASKKNSLNTHMKTHLGNKPHSSNLVKHKRTRTGERPYKCDQCEYSASHKSRLNDHMKLHLGTKPYACDMCDYRASNSGALVTHRRSHTGERPFKCDRCEYSARLKSCLVAHKKTHSSEKPYACDMCDYKTSNSRGLVTHNRTHTGERPFKCDRCEYSARQKSCLVAHMKTHSSEKPYACDMCDYKTSNSRGLVTHNRTHTGERPFKCDQCEYSAIQKNSLNIHMMTHLGNKPHACDICDYRTLHSSNLVKHKRTHTDERPYKCGQCEYGARDKSRLNDHMKTHSNDKPYSCDICDYKTAHSGVLIRHKRTHTGERSFKCDQCEYSATMKWNLKTHMKIHLSKKPCTLGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-