Basic Information

Insect: Sialis lutaria
Gene Symbol: -
Assembly: GCA_949319165.1
Location: OX439240.1:5687263-5689334[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 7.3e-05 0.004 17.8 3.4 1 23 96 118 96 118 0.99

2 14 0.00026 0.014 16.0 3.1 1 23 124 146 124 146 0.98

3 14 0.0026 0.14 12.9 4.4 1 23 152 174 152 174 0.98

4 14 0.00049 0.026 15.2 5.5 1 23 180 202 180 202 0.98

5 14 0.0031 0.17 12.7 0.6 1 23 221 243 221 243 0.97

6 14 0.00044 0.024 15.3 2.5 1 23 249 271 249 271 0.97

7 14 4.8e-05 0.0026 18.3 2.7 1 23 277 299 277 299 0.98

8 14 1.7 93 4.0 6.5 1 23 305 327 305 327 0.96

9 14 5e-05 0.0027 18.3 2.5 1 23 333 355 333 355 0.98

10 14 5.7e-05 0.0031 18.1 2.2 1 23 361 383 361 383 0.99

11 14 0.021 1.1 10.1 1.9 1 23 389 411 389 411 0.97

12 14 0.00025 0.013 16.1 1.3 1 23 418 440 418 440 0.98

13 14 0.00058 0.032 14.9 0.3 1 23 446 468 446 468 0.98

14 14 0.0001 0.0055 17.3 4.6 1 23 474 496 474 496 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	7.3e-05	0.004	17.8	3.4	1	23	96	118	96	118	0.99
2	14	0.00026	0.014	16.0	3.1	1	23	124	146	124	146	0.98
3	14	0.0026	0.14	12.9	4.4	1	23	152	174	152	174	0.98
4	14	0.00049	0.026	15.2	5.5	1	23	180	202	180	202	0.98
5	14	0.0031	0.17	12.7	0.6	1	23	221	243	221	243	0.97
6	14	0.00044	0.024	15.3	2.5	1	23	249	271	249	271	0.97
7	14	4.8e-05	0.0026	18.3	2.7	1	23	277	299	277	299	0.98
8	14	1.7	93	4.0	6.5	1	23	305	327	305	327	0.96
9	14	5e-05	0.0027	18.3	2.5	1	23	333	355	333	355	0.98
10	14	5.7e-05	0.0031	18.1	2.2	1	23	361	383	361	383	0.99
11	14	0.021	1.1	10.1	1.9	1	23	389	411	389	411	0.97
12	14	0.00025	0.013	16.1	1.3	1	23	418	440	418	440	0.98
13	14	0.00058	0.032	14.9	0.3	1	23	446	468	446	468	0.98
14	14	0.0001	0.0055	17.3	4.6	1	23	474	496	474	496	0.98

Sequence Information

Coding Sequence: ATGTTTTCTATCAAACAAGAAAACATAGAAGAAGAAGTAAATAATGAAGATTGTCCTCAAGATACTGACAGTTATGATATCTGttcaatatttttgaaacaggAGTATCAGgaAGACGCAGCAGTAGAAGAAAATCAATCCGAAACTCAAAATGAAGATCCtattacaaaaacaaatttaaattcactGAATGAATTTGAAAACGATAACAAAAATGAAACGGTTCAAAATGACATCAGCCTTACCGATCACCTTTCTTCTGCACATGACGTTAATACGGAACAATACAAATGcaaccagtgtgaatatagctgtgtGCAGATAAAACAACTGAAAAGACATATATTAACACACGATGATGATAAACCATTCAAATGTAACATTTGCGAATACAAGacttcaaataaacaaacattaacaacacataaattaacacacagTAATGAATgcccttttaaatgtgatctTTGCGAATATACATGTATACGAAAAATTCAACTGaaaacacataaattaaaacatagtaATAAACGACCTTTCCAATGTGAAGAATGCGAATACTCGAGTGTCCATAAAAATCATTTgaaaagacataaattaacacatactaaaGAACGGCCTTCAAGTAATGGTACTTTAACACATAGTAATGAACGACCATTCGAATGCGACCAATGCCAATATAAATCTTCAATCAAAGGTAATTTGatcaaacataaattaatacataccgATATACGACCTTTCGAATGCGACCAATGCCAATACAGCTGCATACAAAAAAGTAGTTtaataacacataaaatatCTCACAGTGATGAACGACCGTTCAAGTGCGACCAATGCGAGTACAGGTCTTCGCGAAAAGGTAATTTGACAAAACATAAGTTAACGCATTCCGGTATaaaaccatttaaatgcgaccaatgcgaaTATAACTGTTTAACCAAAAAGCAACTACACAGACATAAATTAGCACATTTAAATGAACGACCATTCAAGTGCGACCAGTGTGAAAACAGTTACAGAGATAAAGGTAATTTAACAAGACATAAATACACGCATACTAATatacgaccatttaaatgcgaccattgCGAGTACAGTTCAATACGAAAAGATGATTTAAGAGTACATACACTAACACATACTAACGGGCGACCTTTCCAATGCGACCTATGCGAATATAACTGTTTAACAGAAAAACAACTGAATAGACATATGTTAGCGCATGGAGGAAGAGAACGACCATataaatgtgatcagtgcgGAAACAGTTATATGGATAAAGGTACTTTAACTAcgcataaattaaaacatacaaacgaacgacctttcaaatgcgaccaatgtgaatacggTGGTGTACGAAAAGCTGATTTGGAAAGACATAAACTAACGCATTCTAATATACGACCGTTTAAATGcgatcagtgtgaatatagctgtgtACGGAAAGATCAATTGAAAACACATCAATCAAGACACAGCGTGAATCAACTATATACAGAAAATGCAAGTGACAGCTCGTAA
Protein Sequence: MFSIKQENIEEEVNNEDCPQDTDSYDICSIFLKQEYQEDAAVEENQSETQNEDPITKTNLNSLNEFENDNKNETVQNDISLTDHLSSAHDVNTEQYKCNQCEYSCVQIKQLKRHILTHDDDKPFKCNICEYKTSNKQTLTTHKLTHSNECPFKCDLCEYTCIRKIQLKTHKLKHSNKRPFQCEECEYSSVHKNHLKRHKLTHTKERPSSNGTLTHSNERPFECDQCQYKSSIKGNLIKHKLIHTDIRPFECDQCQYSCIQKSSLITHKISHSDERPFKCDQCEYRSSRKGNLTKHKLTHSGIKPFKCDQCEYNCLTKKQLHRHKLAHLNERPFKCDQCENSYRDKGNLTRHKYTHTNIRPFKCDHCEYSSIRKDDLRVHTLTHTNGRPFQCDLCEYNCLTEKQLNRHMLAHGGRERPYKCDQCGNSYMDKGTLTTHKLKHTNERPFKCDQCEYGGVRKADLERHKLTHSNIRPFKCDQCEYSCVRKDQLKTHQSRHSVNQLYTENASDSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -