Slut008454.2
Basic Information
- Insect
- Sialis lutaria
- Gene Symbol
- -
- Assembly
- GCA_949319165.1
- Location
- OX439236.1:21119027-21121480[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 6.7 3.6e+02 2.2 0.1 1 20 112 131 112 133 0.89 2 22 0.00088 0.048 14.4 0.8 1 23 162 184 162 184 0.98 3 22 0.00015 0.008 16.8 0.3 1 23 190 212 190 212 0.98 4 22 0.0012 0.065 14.0 1.2 1 23 218 240 218 240 0.98 5 22 0.00017 0.0092 16.6 1.2 1 23 246 268 246 268 0.98 6 22 0.012 0.67 10.8 1.3 1 23 274 296 274 296 0.98 7 22 0.00023 0.012 16.2 0.3 1 23 302 324 302 324 0.99 8 22 0.13 6.9 7.6 0.2 2 23 331 352 330 352 0.96 9 22 0.035 1.9 9.3 0.9 1 23 358 380 358 380 0.98 10 22 1.7 90 4.1 1.2 1 23 386 408 386 408 0.89 11 22 0.00017 0.0092 16.6 1.2 1 23 427 449 427 449 0.98 12 22 0.012 0.67 10.8 1.3 1 23 455 477 455 477 0.98 13 22 0.00023 0.012 16.2 0.3 1 23 483 505 483 505 0.99 14 22 0.13 6.9 7.6 0.2 2 23 512 533 511 533 0.96 15 22 0.035 1.9 9.3 0.9 1 23 539 561 539 561 0.98 16 22 1.7 90 4.1 1.2 1 23 567 589 567 589 0.89 17 22 0.00017 0.0092 16.6 1.2 1 23 608 630 608 630 0.98 18 22 0.012 0.67 10.8 1.3 1 23 636 658 636 658 0.98 19 22 0.00023 0.012 16.2 0.3 1 23 664 686 664 686 0.99 20 22 0.13 6.9 7.6 0.2 2 23 693 714 692 714 0.96 21 22 0.035 1.9 9.3 0.9 1 23 720 742 720 742 0.98 22 22 1.7 90 4.1 1.2 1 23 748 770 748 770 0.89
Sequence Information
- Coding Sequence
- ATGGATACATCGACAGAAAATGTACCActagatattaaaaaagaacCAGAAGAACAagagaaacctgaagaatttgCAAAAGTGTTTGTAAAAGAATATGCATCAAATGTTGACAATGAACCTACATCAAGTTTTCATGTTAAACAAGAAACACTCCCAAATGAAAATGTACCTATTGAAAAAGATACTTATGACCAGCCAGACAGCTCTTGTATTGCAGTTTCAGATGAAGATAATACCACATATGAgaacaataaaaattgtatcaaaCCAGGAAgtagttttttaaattgtaaagtcATGGTAGAGAGAGTTAATTATAAGGATCATTATTTTGTATGTGAAATTTGCtatgatacatttttaaaaacagaAGACCTACAAACGCATCTTACAGAAACGTGTCGTCGTTCACCAATTCTCATCGAACCTGAAACTAACATAAAAGTGTGCAGTACTAAATCTAATAAAGCAAAGAAAGTTTATGTATGTGAACAGTGCGATTATAACACATACAGGAAAACCGATCTCATAACTCATAACAGAATACATTCAGGTGACCGCCCTTTCCCGTGTAACCAGTGTCCGTACAGTACGATAACAGCATACAAACTTGCAATACATAGGAGAACTCATACAGGCGAACGTCCGTATTCATGTGATCAGTGCGAATATAAAACTGCTACATCTAGCAAGCTTGTGATACACAAACGCAGACATACTGGCGAACGGCCTTACGtgtgcgaccaatgtgaatacagcacCACTACATCAAGCAAACTTGTTATCCATAAACGAAAACACACTGGCGAACGACCTTACCcgtgcgaccagtgtgaatacagtgCAGTTACGTCCCACAAATTGGTGTTGCATAAACGGAAGCACAGAGGAGATGAATTGTACGTCTGCGACGAATGCAATTATAACGCGGCGACAGCTTCGTACCTTATAAAACACAAGAGGAAGCATACGGGAGAACGGCATCTATCGTGCGACTGGTGCGAATATAAAACAGCGTGGTCCAGTGATCTGGCAAAACACAAGCGGATTCATACCGGCGAACGCCCTTACAAATGTGATCAGTGTGAGTATAGTGCGTCTGTGTCCTACAGACTTGTAGTGCATAAAAAGAAACATACCGGCATACGACCTTACAAATGTGATCAGTGTGATTTCAATACATTCACAAAGAGAATTCTTATAGCACATAAAACTGAACATACGGACCAAGGCAAGCTTGTGATACACAAACGCAGACATACTGGCGAACGGCCTTACGtgtgcgaccaatgtgaatacagcacCACTACATCAAGCAAACTTGTTATCCATAAACGAAAACACACTGGCGAACGACCTTACCcgtgcgaccagtgtgaatacagtgCAGTTACGTCCCACAAATTGGTGTTGCACAAACGGAAGCACAGAGGAGATGAATTGTATGTCTGTGACGAATGTAATTATAACGCGGCGACAGCTTCGTACCTTATAAAACACAAGAGGAAGCATACGGGAGAACGGCATCTATCGTGCGACTGGTGCGAATATAAAACGGCGTGGTCCAGTGATCTGGCAAAACACAAGCGGATTCATACCGGCGAACGCCCTTACAAATGTGATCAGTGTGAGTATAGTGCGTCTGTGTCCTACAGACTTGTAGTGCATAAAAAGAAACATACCGGCATACGACCTTACAAATGTGATCAGTGTGATTTCAATACATTCACAAAGAGAATTCTTATAGCACATAAAACTGAACATACGGACCAAGGCAAGCTTGTGATACACAAACGCAGACATACTGGCGAACGGCCTTACGtgtgcgaccaatgtgaatacagcacCACTACATCAAGCAAACTTGTTATCCACAAACGAAAACACACTGGCGAACGACCTTACCcgtgcgaccagtgtgaatacagtgCAGTTACGTCCCACAAATTGGTGTTGCATAAACGGAAGCACAGAGGAGATGAATTGTATGTCTGCGACGAATGTAATTATAACGCGGCGACAGCTTCGTACCTTATAAAACACAAGAGGAAGCATACGGGAGAACGGCATCTATCGTGCGACTGGTGCGAATATAAAACGGCGTGGTCCAGTGATCTGGCAAAACACAAGCGGATTCATACCGGCGAACGCCCTTACAAATGTGATCAGTGTGAGTATAGTGCGTCTGTGTCCTACAGACTTGTAGTGCATAAAAAGAAACATACCGGCATACGACCTTACAAATGTGATCAGTGTGATTTCAATACATTCACAAAGAGAATTCTTATAGCACATAAAACTGAACATACGGACCAAGGGTCAACACAGTCGAACAATGCTCTTGTTTAA
- Protein Sequence
- MDTSTENVPLDIKKEPEEQEKPEEFAKVFVKEYASNVDNEPTSSFHVKQETLPNENVPIEKDTYDQPDSSCIAVSDEDNTTYENNKNCIKPGSSFLNCKVMVERVNYKDHYFVCEICYDTFLKTEDLQTHLTETCRRSPILIEPETNIKVCSTKSNKAKKVYVCEQCDYNTYRKTDLITHNRIHSGDRPFPCNQCPYSTITAYKLAIHRRTHTGERPYSCDQCEYKTATSSKLVIHKRRHTGERPYVCDQCEYSTTTSSKLVIHKRKHTGERPYPCDQCEYSAVTSHKLVLHKRKHRGDELYVCDECNYNAATASYLIKHKRKHTGERHLSCDWCEYKTAWSSDLAKHKRIHTGERPYKCDQCEYSASVSYRLVVHKKKHTGIRPYKCDQCDFNTFTKRILIAHKTEHTDQGKLVIHKRRHTGERPYVCDQCEYSTTTSSKLVIHKRKHTGERPYPCDQCEYSAVTSHKLVLHKRKHRGDELYVCDECNYNAATASYLIKHKRKHTGERHLSCDWCEYKTAWSSDLAKHKRIHTGERPYKCDQCEYSASVSYRLVVHKKKHTGIRPYKCDQCDFNTFTKRILIAHKTEHTDQGKLVIHKRRHTGERPYVCDQCEYSTTTSSKLVIHKRKHTGERPYPCDQCEYSAVTSHKLVLHKRKHRGDELYVCDECNYNAATASYLIKHKRKHTGERHLSCDWCEYKTAWSSDLAKHKRIHTGERPYKCDQCEYSASVSYRLVVHKKKHTGIRPYKCDQCDFNTFTKRILIAHKTEHTDQGSTQSNNALV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -