Basic Information

Insect: Sialis lutaria
Gene Symbol: -
Assembly: GCA_949319165.1
Location: OX439239.1:9748682-9750859[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00025 0.014 16.1 3.0 1 23 162 184 162 184 0.97

2 11 0.00032 0.017 15.8 8.1 1 23 190 212 190 212 0.95

3 11 2.9e-05 0.0016 19.0 6.6 1 23 218 240 218 240 0.99

4 11 3.1e-05 0.0017 18.9 2.4 1 23 246 268 246 268 0.97

5 11 3e-06 0.00016 22.1 0.3 1 23 274 296 274 296 0.97

6 11 1.9e-05 0.001 19.6 0.1 1 23 302 324 302 324 0.97

7 11 0.0041 0.22 12.3 0.1 2 21 330 349 329 350 0.95

8 11 5.6e-06 0.0003 21.3 0.7 1 23 378 401 378 401 0.98

9 11 0.0006 0.032 14.9 0.4 2 23 408 429 407 429 0.96

10 11 0.00046 0.025 15.2 3.3 1 23 480 502 480 502 0.96

11 11 0.00026 0.014 16.1 5.1 1 23 512 534 512 534 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00025	0.014	16.1	3.0	1	23	162	184	162	184	0.97
2	11	0.00032	0.017	15.8	8.1	1	23	190	212	190	212	0.95
3	11	2.9e-05	0.0016	19.0	6.6	1	23	218	240	218	240	0.99
4	11	3.1e-05	0.0017	18.9	2.4	1	23	246	268	246	268	0.97
5	11	3e-06	0.00016	22.1	0.3	1	23	274	296	274	296	0.97
6	11	1.9e-05	0.001	19.6	0.1	1	23	302	324	302	324	0.97
7	11	0.0041	0.22	12.3	0.1	2	21	330	349	329	350	0.95
8	11	5.6e-06	0.0003	21.3	0.7	1	23	378	401	378	401	0.98
9	11	0.0006	0.032	14.9	0.4	2	23	408	429	407	429	0.96
10	11	0.00046	0.025	15.2	3.3	1	23	480	502	480	502	0.96
11	11	0.00026	0.014	16.1	5.1	1	23	512	534	512	534	0.97

Sequence Information

Coding Sequence: atgtTGGGAACTGTTAGACCGTTATCGGAAATGGGTACTGCACCTAATGTTTCCAGTGGATTCAGTTATTGGCATTCTGGTGAAACATCTCGCACTGAACCAGTTATCGAAGTACCTCCTCATCTAAGTTATGCTAGTTCTTTACAAGATGtaacgaaactaaaaacttcAAGGCGACCAGTGTTTGTTATGAATGAGAAACAATCACATGATGTATTCGGTATAGCTTGTGATAAAAACTGTGCGTGCGAAGGAACTGACAGTAAACATTTTATGACCCCTCTTGGACCGTTACAACTGACTGCCGAAGAGTGTAACGACATACTAATGAAACGGGCGGCTGCAGCAGCATCAACGTCCACTGGGTCACAACCTATTCAAATTGTGCAAAACGTTCAAATCACGCCACCTAGCGAAGCGGGTGATATAAAACCCATTATAAAACGGTCTGCATCTTCAAACGGTATGCCGAAAGAGAGACCTTATGCATGCAACGAGTGCGGAAAGTCCTTTCTGTTAAAACACCATTTGACGACACATGCTCGAGTTCACACGGGAGAGAGACCTCACGCGTGTCCCCACTGTGGGAAAGCCTTCGCTCATAAGCACTGTCTCAACACACACTTACTTTTACACAGCAGTGACAGACCTTACCAGTGCTCTGAGTGTAAGAAGAGCTTTACATTGAAACATCATTTACTCACTCACACTCGTGTTCATAGTCGTGAAAGACCGTTTGTCTGCACAGAGTGTGGACGTTCATTTCCGCTTAAGCGGCATCTTGTAACACATCAAAAGTTTCATGCCGGTGAGAGACCGTTTGTTTGTCCTGTTTGCGGCGAGTCATTTGCTCAAAAGGAACACTTGGTAATGCACGCACGATTCCACGGTTCTCTCACACCATTTGTATGTCCCGATTGTGGGGCTACGTTTCAGCGCAAGTTTGAACTTGTCAATCATGGCCGACTACACGGTCGCATTCCCCAGTCTTGTCCCGTCTGTAACAAGGAGTTCTTACAAAAGCGAACACTAGTAGCACATATCAGGTATAATCTGCTggtgttttttatcaatatattcTGTTTAATTACTAGGTTTTGTATATTCAGGTTACACAACACTGACCAGCCTTTCACATGTCTTCAATGCGGGGAAGCGTTTCGCACAAAGCTGGAGCTGACGCAGCACATCAAGACAACACATTCGTCCGAGAAGCCGTTGGTCTGCAGCGAGTGTGGTAGCTGTTTCAACAGTCGTGAGGCGATGGCGTTGCATATCCGCCTTCATTCCGGTGACAAGTCGTTCGTGACGGACCTGTGCGTGTTGACGGCATCGCTCCAGACCCACGCCACGGGCCAGCCATCTGGAGTAGCGCAGAATTCGAACGTGAGTCAGGCAAGCAACAGTAATGCTTCCTCGTTGAACAAACCGAAACCCCACATTTGTCCCCACTGTGGCAAGGCATTTGCCGCTAAACACGGCTTGTTGCAACACAACAAGAGACATCCGGAGGGCGCGTGTACCCTCAGGACTCACGTTTGTGAGACGTGCAATAAAGCGTTCTTCCAGAAAAACCACCTGTTGCTGCACCAACGGCAGCACATGGAATCCAAGCCGAGCGCGATCACGTCGTCTGCAGCGAACCACTCCCCGTCGGGCTCCATGTCGCAGTCTGCGCCGGTCATCTCGCAGGCGTCCATACAGCAGTCCCAGCAGCAGCACCAGATCCAACAGCATCATCAGAGCGTTTCGTCCAATTCCGTTAATAGTTAG
Protein Sequence: MLGTVRPLSEMGTAPNVSSGFSYWHSGETSRTEPVIEVPPHLSYASSLQDVTKLKTSRRPVFVMNEKQSHDVFGIACDKNCACEGTDSKHFMTPLGPLQLTAEECNDILMKRAAAAASTSTGSQPIQIVQNVQITPPSEAGDIKPIIKRSASSNGMPKERPYACNECGKSFLLKHHLTTHARVHTGERPHACPHCGKAFAHKHCLNTHLLLHSSDRPYQCSECKKSFTLKHHLLTHTRVHSRERPFVCTECGRSFPLKRHLVTHQKFHAGERPFVCPVCGESFAQKEHLVMHARFHGSLTPFVCPDCGATFQRKFELVNHGRLHGRIPQSCPVCNKEFLQKRTLVAHIRYNLLVFFINIFCLITRFCIFRLHNTDQPFTCLQCGEAFRTKLELTQHIKTTHSSEKPLVCSECGSCFNSREAMALHIRLHSGDKSFVTDLCVLTASLQTHATGQPSGVAQNSNVSQASNSNASSLNKPKPHICPHCGKAFAAKHGLLQHNKRHPEGACTLRTHVCETCNKAFFQKNHLLLHQRQHMESKPSAITSSAANHSPSGSMSQSAPVISQASIQQSQQQHQIQQHHQSVSSNSVNS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -