Slut003942.1
Basic Information
- Insect
- Sialis lutaria
- Gene Symbol
- -
- Assembly
- GCA_949319165.1
- Location
- OX439233.1:17208253-17223407[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0003 0.016 15.8 2.3 2 23 41 62 40 62 0.97 2 18 0.00012 0.0067 17.1 0.8 1 23 81 103 81 103 0.98 3 18 0.00011 0.0057 17.3 0.3 1 23 108 131 108 131 0.96 4 18 0.037 2 9.2 0.4 2 23 135 157 134 157 0.96 5 18 0.081 4.4 8.2 0.0 3 19 167 183 166 186 0.87 6 18 0.0007 0.038 14.7 0.2 1 23 194 216 194 216 0.98 7 18 0.074 4 8.3 0.7 1 23 222 244 222 244 0.96 8 18 0.00021 0.011 16.3 3.2 1 23 250 272 250 272 0.98 9 18 0.12 6.5 7.6 2.2 1 23 278 300 278 300 0.98 10 18 0.0033 0.18 12.6 0.1 3 23 584 604 582 604 0.96 11 18 0.31 17 6.3 0.5 6 23 616 634 616 634 0.96 12 18 0.0029 0.16 12.7 0.1 3 23 646 666 644 666 0.95 13 18 0.0038 0.21 12.4 2.2 2 21 701 720 700 723 0.93 14 18 0.002 0.11 13.3 0.1 1 21 733 753 733 754 0.92 15 18 0.0001 0.0057 17.3 1.2 1 23 763 785 763 785 0.98 16 18 0.0081 0.44 11.3 0.3 3 23 793 813 792 813 0.97 17 18 0.00033 0.018 15.7 1.8 1 23 819 841 819 841 0.97 18 18 0.97 53 4.8 0.6 1 21 847 867 847 868 0.89
Sequence Information
- Coding Sequence
- ATGGATAATGAACATTTATctgaaaataattcaaatacttTACTTGAAGAAAAGTATAATGAAACTACAGATTCAACAAATAATGTTGAGacaaATGTAGAAAATCAAACCGACATAAACAAGTGTAAATATTGTGAAAAAATTCTATctaatgaaaaatcattaaatagaCATCAAAAACAAcatgagaaaaaaattaatgaaaaaaatttaaaagatagCAATAGCGATGCAAATTTATTTGAATGTAAATTATGTGGACAACTGTTTCGATATTCTACCGGACTACAAAAACATTTAGCCCGTCATGAAAATAAAGGGTTTGTTTGTCAGACGTGTGGAGAGTCTTTCAGTAATCCTGATTTAAGAGAGAAACATCGTGAAAAAGTACATAAAATATGGAAGTGCTTTTTATGCAATATTCGATTCAACAAAGAAGTACAATATCTGCTCCATATTGAAACATTACATGAAGGACGAAACCAAGAGCAAGCAATTTGTAATGCTTGcggaaaacaatttaaaaataaagcagCTCTTGCACCACATTTAGCTTCAAAATGTGGAACAGTTAAAAGatttaaatGTAATGAATGCGGGCAGATGTTGATGACTGCTGGTGCGCTTTTCAACCACCGACTTCGACATACCGGCAAACGGTCTCATATGTGTCGATTTTgtgcaaaaacatttttaactgCAGGTCAGCTTGTAGTTCATGAAAGAATTCATACACAAGAAAAAGTTTTTGTGTGTGATgtCTGTAATAAAGGATTTTGCCATCGTCAAACTTTAATCACACATTTGTCTGTACATACTGGAATTAAACCTTACACTTGCGAAGGGTGTTCAAGTGACTTTTCTTGTAtaggaaatttattaaaacatcgtAAAACTCATGCTGATACTTGTGGAATTTTCCCATTGACTACGACGAGTGTAAAAAATCCAAATACAAAATTACGATTACAGGCGAACATAAAAACGGGAATTAAAAttcgcaaaaataaaaataaagagatcataagtaatattttgAGTGAATGTAAAGATAATCCAAACATGGTTTTAGATGATCTCCCTGAAAAAACAGAGAAAGAtgatttgttaaattattttcctgATAAACAAAATAGCGAAAGTGATTTTGTGAAAAGTTCCAATGATTCAGATGATTGTGgagttttaaaaattgaatcTACTTCAGATGATTTAGTTAATAACAAAACAGATACAGATGTAGAGAATTTGttcataaaaaaagaaaatatcagTAATTTAGAATCTCGTGAATATTATGTGGAAGACtgtgataatgaaaattcaaaaaattgcttacaaaagaaaattaaattaaaaatacctgTAAGAAACATTATTAACAGTGATAGTATAACAAATAACAACACTGTAAAATTAAGAAGTAgtaatgaaaaacataaaaataatattatagtaaatgTCAAAGAAGaagattttgaaaatattaaagaagaaactgacgaaataaaagaaaatgtaaGTTTGGATGATGTTAAATCTGAAAACGATGATAATTTTGGTTATGATTATGATTGGTCATTACAAGAAAACGAAACTGATGATTCAGATTCAGATGATTCAGTTGATTTGAAAACAAGACTGAAAAAAAGCagagataagaaaaaaaaatgtaaaaggaAGATGGATACAAGTAAGAGTAGTAAATTTGTCGAAGAAAGACTAACAGGAGATGGTAAAACTATGGCTTGTAAAATATGTGGACAAGTTTACGGTAGTTTGCGGTGGCTTATGAGACATGAAGAATCACATAATTCTGAGAATAAACAGTATAAGTATACGTGTTGTAATGAAAGATTTGAAAAACGTAAAGACTTTATAAATCATCAAAAACAAGTTCATAAAGATCAATTGGGTGATGGAAAAAATTTAGCATGTAAAATATGTGGACAGGTTTATGGTAGTTTAAGGTGGCTTATGAGACATGAAGAATCACACAATTCGGCAAGTAAACATTACAAATGTACTTGCTGTAATGAAAAATTTGAAAACCGTAAGGAATGCATTAATCATCAGAAAGAAATGCATAAAGATCAACttgaatGTCCAATTTGCCATAAAGTATTTTCGAATATAGACAGTAAACAAACACACATAAATTGTAACCATTATGGAATGCCGAGGAAAACATACAAGTATATCTGTGACAAATGCGGTAAAACATTTTACTTAAAACAAGGATTAGCTGTGCATGAAATGAGCAATTGTGgtGAATCTGGAAAATTATACAATTGTGAGATATGTGATAGAAAATTTAGTTCTGTATATAGTCGTAAAGCACACATGAAATTGCATGAAGGTAATAAGCCATTGTTATGTAAGTTCTGTGGAAAGGGATTTGTATGGAAAGGTCAACTGAAAATTCATGAAAGAGGTCATACAGGAGAGAAACCCTATCAATGTcaattttGTACAAAATCATTTGCTTATCGTGAGAGCCTAATAACGCACAACAGTATGCATACTGGAATAAAACCATATATCTGTTCCGGATGTGGATCAAGGTTCTCATGTGTCGGAAACATGCTGAAACACAAGCGAGCACGGGCATCATCGTGCGGGCTTATTAAAGATAACCAAGTAGGCTCCCGCATTTTCCACGGCCACGTGAACACAGAGGGTGTGCATCTGAAAAAACGTGATATAATGTTACGGATTCAACAAGCAACACAGATGAATCATAACAATGTCGAAAACGTTGCtgtttaa
- Protein Sequence
- MDNEHLSENNSNTLLEEKYNETTDSTNNVETNVENQTDINKCKYCEKILSNEKSLNRHQKQHEKKINEKNLKDSNSDANLFECKLCGQLFRYSTGLQKHLARHENKGFVCQTCGESFSNPDLREKHREKVHKIWKCFLCNIRFNKEVQYLLHIETLHEGRNQEQAICNACGKQFKNKAALAPHLASKCGTVKRFKCNECGQMLMTAGALFNHRLRHTGKRSHMCRFCAKTFLTAGQLVVHERIHTQEKVFVCDVCNKGFCHRQTLITHLSVHTGIKPYTCEGCSSDFSCIGNLLKHRKTHADTCGIFPLTTTSVKNPNTKLRLQANIKTGIKIRKNKNKEIISNILSECKDNPNMVLDDLPEKTEKDDLLNYFPDKQNSESDFVKSSNDSDDCGVLKIESTSDDLVNNKTDTDVENLFIKKENISNLESREYYVEDCDNENSKNCLQKKIKLKIPVRNIINSDSITNNNTVKLRSSNEKHKNNIIVNVKEEDFENIKEETDEIKENVSLDDVKSENDDNFGYDYDWSLQENETDDSDSDDSVDLKTRLKKSRDKKKKCKRKMDTSKSSKFVEERLTGDGKTMACKICGQVYGSLRWLMRHEESHNSENKQYKYTCCNERFEKRKDFINHQKQVHKDQLGDGKNLACKICGQVYGSLRWLMRHEESHNSASKHYKCTCCNEKFENRKECINHQKEMHKDQLECPICHKVFSNIDSKQTHINCNHYGMPRKTYKYICDKCGKTFYLKQGLAVHEMSNCGESGKLYNCEICDRKFSSVYSRKAHMKLHEGNKPLLCKFCGKGFVWKGQLKIHERGHTGEKPYQCQFCTKSFAYRESLITHNSMHTGIKPYICSGCGSRFSCVGNMLKHKRARASSCGLIKDNQVGSRIFHGHVNTEGVHLKKRDIMLRIQQATQMNHNNVENVAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01343328;
- 90% Identity
- -
- 80% Identity
- -