Slut017360.1
Basic Information
- Insect
- Sialis lutaria
- Gene Symbol
- -
- Assembly
- GCA_949319165.1
- Location
- OX439244.1:11428015-11429250[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.007 0.38 11.5 7.4 1 23 67 89 67 89 0.94 2 12 1.3e-05 0.00072 20.1 1.9 1 23 95 117 95 117 0.98 3 12 0.00018 0.0096 16.6 3.5 1 23 123 145 123 145 0.99 4 12 0.2 11 7.0 9.4 1 23 152 174 152 174 0.94 5 12 0.00031 0.017 15.8 5.2 1 23 180 202 180 202 0.96 6 12 4.9e-06 0.00026 21.5 0.5 1 23 208 230 208 230 0.98 7 12 8e-07 4.3e-05 23.9 0.8 1 23 236 258 236 258 0.98 8 12 4.6e-05 0.0025 18.4 6.3 1 23 264 286 264 286 0.99 9 12 3.5e-06 0.00019 21.9 0.4 1 23 292 314 292 314 0.96 10 12 0.0073 0.39 11.5 0.0 3 23 322 342 320 342 0.96 11 12 0.00016 0.0084 16.7 5.8 1 23 348 370 348 370 0.96 12 12 0.00016 0.0085 16.7 0.1 1 23 376 398 376 398 0.97
Sequence Information
- Coding Sequence
- ATGTCTGCAGAATCTGACTTTGATATAAAACTTGAACCTGGAGATTTAGTTGAAACAGAACTACTAGAAGAATCCGACTCACAAGAATGGAGCGTTGATAATGTTGACATTAAAGAAGAATCGTTAGATAATGAAAACAGTGAAACAACCACCGAACGGAAAGTTGTAAGACGTAAAACTCGTAAGAAAGAACAAACGTTTAAATGCgacatttgttttaaaatattcaacaaGAAAAGTCATTTCCAAGAACACTGCAAAATCCATACAGGTGAAAGACCATTTGAATGTTACATATGCCTTCAGACTTTTTCTCGGCAGAGCCACGTGAACCGACATATTCTAATACACAGTAGGAAACAGAATTTCAAATGCAATACTTGTTCCGAAACATTTTTCCTCAAACGGGAATTAAAAAGTCACTTGAAAACGCACATCGTCAAGCAATATGTATTCGAATGTGATGTATGTAAGAGGAAATTTCATAAGAAAAGTCATTACCAAGAACATTGTAAAATACATACGGGAGAACGTCCGTTCCACTGTGAAATTTGTTCACAATTGTTTACAAGAAGAAGTCACTTGAAACGCCATTCATTGATTCACACGGGGAACAAGCCGTATTCTTGTTCGATATGTAACAAAAAGTTTGCAGAACAGAAAGACTTGAAAGACCACATAACAGTTCACAATAACGAACGAGCATTCGAATGTGACGTCTGTCTTAAAACATTTTCACGACAGAATAATTTAAAGCAACATCTGTTGATACATAAAGGAGTTCGTCCCTATGAATGTGAAATTTGTCACAAGTCTTTCTTACGACAGACTCACTTAAACCAGCACAAAAGAACTCATGATGATATAAAAGCATACGAATGCGAGGTGTGTAATAAAGCATTCAAGTTACGATCAGATTTGAAACGACATTCTATCATACACAGTGACGAGCTGCCATATGGATGTGACTTTTGTGAGAAAATGTTTGCAGAGGAATCGCAATTAGATGAGCATGTTTTGATCCATAGAGAGGAGACTACACATTTCTGTGATATATGTTTTAAGTTGTTTACGCGTCGCCAACATTTAGAAAAGCACCTTCGTGTGCACACCTGTGTGAAACCTTACGAATGTGTGACGTGCGGTGATACTTTTGCCAGACGTGCAGATTTGACTAGGCATTACGTAGTTCATAGAAAAATAGAAGTAGATGGACAACAGAGTGAAGATGCAtag
- Protein Sequence
- MSAESDFDIKLEPGDLVETELLEESDSQEWSVDNVDIKEESLDNENSETTTERKVVRRKTRKKEQTFKCDICFKIFNKKSHFQEHCKIHTGERPFECYICLQTFSRQSHVNRHILIHSRKQNFKCNTCSETFFLKRELKSHLKTHIVKQYVFECDVCKRKFHKKSHYQEHCKIHTGERPFHCEICSQLFTRRSHLKRHSLIHTGNKPYSCSICNKKFAEQKDLKDHITVHNNERAFECDVCLKTFSRQNNLKQHLLIHKGVRPYECEICHKSFLRQTHLNQHKRTHDDIKAYECEVCNKAFKLRSDLKRHSIIHSDELPYGCDFCEKMFAEESQLDEHVLIHREETTHFCDICFKLFTRRQHLEKHLRVHTCVKPYECVTCGDTFARRADLTRHYVVHRKIEVDGQQSEDA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01343334;
- 90% Identity
- iTF_01343334;
- 80% Identity
- -