Slut003405.1
Basic Information
- Insect
- Sialis lutaria
- Gene Symbol
- -
- Assembly
- GCA_949319165.1
- Location
- OX439233.1:138238-142388[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 8.4 4.6e+02 1.8 0.2 1 17 56 72 56 73 0.86 2 13 0.00018 0.0096 16.6 1.5 1 21 156 176 156 177 0.95 3 13 0.0031 0.17 12.6 0.7 1 23 194 216 194 216 0.98 4 13 0.0002 0.011 16.4 0.6 3 20 221 238 220 240 0.94 5 13 0.00012 0.0068 17.0 0.6 1 23 258 280 258 280 0.98 6 13 9.4e-05 0.0051 17.4 4.3 1 23 287 309 287 309 0.98 7 13 7.7e-06 0.00042 20.8 0.7 1 23 315 338 315 338 0.97 8 13 2.5e-06 0.00014 22.4 0.6 1 23 356 378 356 378 0.98 9 13 1e-06 5.5e-05 23.6 1.0 1 23 384 407 384 407 0.96 10 13 0.025 1.3 9.8 0.5 1 23 413 435 413 435 0.92 11 13 0.00022 0.012 16.3 1.1 1 23 441 464 441 464 0.94 12 13 0.00053 0.029 15.1 1.9 1 23 470 492 470 492 0.99 13 13 6.6e-05 0.0036 17.9 2.8 2 23 499 521 499 521 0.95
Sequence Information
- Coding Sequence
- atggatgCAAGTTGTCGTGTGTGTCTACGAACTGAGTTGAATCCTTCAGAAGATTTTTACGATTTATTTTCTCTGTGTGCTTCGCTAGATTTTACACTAACTCCTGCAAATGCGATAATGGAGTGTGCTCCTGTACAAgtGAATGAAAACGATGGTTTATCGCGTTACATTTGTAGTGATTGTGTAGAAAAATTACAAACAGCATATAATTTCCGTACAGCTTGTATTGAATCAGATGCAGTTTTACATCAGAAAAATAGTTCTAATTCTaaagaaaagtgtaaaaaaaatgaagatattaATAATGAATCAGTTGAGagtgattgttataataaaagtaaatggaaatgtaaaaattctacagaaaaaaatgaatcttttttacaaaatagaaaTGAATATCCGATAAACGATCAAGAACTATTCAATCAGTTACAACTGGACAATCTGAAAGAAGAGATTACATTTTCTTGTAACAACTGTGATAAAGATTTCATAAGTTCTGATGATTTTGAAAAACATTTATGTGATAAAAGTGATTGCAAGGAGAATAACGTATCAGGAAACAATGAAACCAAGTATTGCTGTGAACTCTGTAAAGCGCAGTTTGATGAAGAGGCGCAACTCAGGGATCATATCCGTTTACACACAGGTGAAGATTGCAATGACTGTGGCCAGAATTTCCCATCAAAAGACCTTCTAAACAAACACGTGTGCGAACAAGACTCTGAAGATACAACAGGGGTAGAGGGGGCGCTAGCACCTACCGTGTACAACTGTACAATATGTACCAAGTTATTCACAAACAGAGCTGCGCTGGACGAGCACACGCGCAGCCACACAAACGACGAGTATCCGTACGTGTGCGACTTTTGCAATAAACGCTTTTGTAGGAAGTATAGCATGATAATACACCGTAGAGGGCACACCGGTGACAAGCCGTTCAAGTGTGAAGTGTGCGAACAGTCTTACAAACTTAACAGCGACCTGACTAAACACATGAAGGAGGTTCACTCGAGTGCTGTCCGTATGGGCAAGCAAGTGTACAGGAATGCACAAAATGAGTTTGTGTGTGAAGATTGTCCAAAGAAATTCACGGACCGCTCGAGATTTATCAGGCACTTGCTAATACACACGGGCGAGTTCCCGTTTGTGTGCGAGGTGTGCGGTAAAGCTTTCAGACAGCAACCACACCTGAGAACGCACGTGCTCCGCTACCACACCAGGGAGAAGCCACATGCGTGTAACGTCTGCGGCAGTAGGTTTGTTACGTCGACAGAGATGTTGTCACATTCAGTCATGCATTCGGATGCGAAGCCTTTCTTGTGCACTGTGTGCGgtaaaatattcaaattgaaGGGTCGGTTGTCGCAGCACATGAAGCAGCAGCACTCTGACTATAGACCCTACAAGTGCACGTACTGTAACAAAGGATTCTTAATGTACACCTCATTGCAGAGTCATCTCAGAGTTCACACGGGAGAACGCCCGGAGgTTTGTGATATGTGCGATAAGACGTTCAAAGAGAAAAAGCATCTGAGAATGCACAGAATAAGGATTCACAAGATTCAGTATAGCACCAACGCTAGAGGGAAACGATGCAGTGACACAGAATCACAAACGGATATAGTTGAGGAGAACTCAAGATGA
- Protein Sequence
- MDASCRVCLRTELNPSEDFYDLFSLCASLDFTLTPANAIMECAPVQVNENDGLSRYICSDCVEKLQTAYNFRTACIESDAVLHQKNSSNSKEKCKKNEDINNESVESDCYNKSKWKCKNSTEKNESFLQNRNEYPINDQELFNQLQLDNLKEEITFSCNNCDKDFISSDDFEKHLCDKSDCKENNVSGNNETKYCCELCKAQFDEEAQLRDHIRLHTGEDCNDCGQNFPSKDLLNKHVCEQDSEDTTGVEGALAPTVYNCTICTKLFTNRAALDEHTRSHTNDEYPYVCDFCNKRFCRKYSMIIHRRGHTGDKPFKCEVCEQSYKLNSDLTKHMKEVHSSAVRMGKQVYRNAQNEFVCEDCPKKFTDRSRFIRHLLIHTGEFPFVCEVCGKAFRQQPHLRTHVLRYHTREKPHACNVCGSRFVTSTEMLSHSVMHSDAKPFLCTVCGKIFKLKGRLSQHMKQQHSDYRPYKCTYCNKGFLMYTSLQSHLRVHTGERPEVCDMCDKTFKEKKHLRMHRIRIHKIQYSTNARGKRCSDTESQTDIVEENSR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -