Slut009510.1
Basic Information
- Insect
- Sialis lutaria
- Gene Symbol
- -
- Assembly
- GCA_949319165.1
- Location
- OX439237.1:20258835-20260262[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00013 0.0073 16.9 0.7 2 23 85 106 85 106 0.97 2 13 0.0005 0.027 15.2 0.5 1 23 112 134 112 134 0.97 3 13 2e-05 0.0011 19.5 1.4 1 23 140 163 140 163 0.96 4 13 0.00099 0.053 14.2 6.2 1 23 169 191 169 191 0.97 5 13 5.7e-05 0.0031 18.1 4.9 1 23 197 219 197 219 0.98 6 13 0.001 0.055 14.2 2.8 1 23 225 247 225 247 0.97 7 13 0.0004 0.022 15.5 3.3 1 23 253 275 253 275 0.98 8 13 0.0093 0.5 11.2 3.8 1 23 283 305 283 305 0.99 9 13 0.0047 0.26 12.1 0.2 1 21 311 331 311 332 0.95 10 13 2.2e-06 0.00012 22.6 0.2 1 23 339 361 339 361 0.99 11 13 2.5e-07 1.3e-05 25.5 1.4 1 23 369 391 369 391 0.99 12 13 9.7e-05 0.0053 17.4 3.1 3 22 399 418 397 419 0.90 13 13 3.7e-05 0.002 18.7 0.9 1 23 425 447 425 447 0.99
Sequence Information
- Coding Sequence
- aTGGATGCAACAACAAACAGTTTTGATTCATCACATGAAGGATTTGGGAATTTACCAGTTAATGTCGAATTGGAGCCCAGTCAAAAACTTAAAGATTCTGAAGACGAATCTGATGAATCAGAATTAGATGCTGAAGAGTACCACATCGAACCAGGTGAAATAAAATGCAGTGATAATGCAATTCGAGATGAAACCgtcaaaactgaaaaaaaagaaaaaacttaCAGACCAAAGACAATCAAAGTGCATAACACTTGTGAACTATGCGGTAAGAAGTTTGATCGATTAGGTCAATTTTTAGTGCATAAGAAAATCCACGCAGGTGAAAAAGTTTTTACTTGTGAAATTTGCAGCAAATCTTTTTTGATACAGAGTAAATTAAACACACACATGGTTGTTCATAGTGATGTTAAATCGTTTAGTTGTGATTTTTGTGGGAAACGATTCAAAACAAGTCCACAAATGATCAAACATCGGAGCAGTGTTCATCTGGGGATTAAACCGTACAAATGTGAATTCTGTGACAAGTGTTATTACAATACTAATCACTTACGAGATCATTTAGTATCTCATACAGGCGAGAGAAACCACAAATGCATGTACTGCGATAGAACATTTGGTCGATACTACAGTTTAATGAAACATAAAAGAATTCATACAGGAGAAACTCCATATCATTGTGACCAATGTGAAAggaaatttaaaacatatggaTCTATGAAAGCTCATACTGCATCACATACAGAAGACAGAGATTTTCCTTGTTCACAATGTGATAGGTCATTTAAAACACACAGAGCACGGAGAGCTCATGAAAAAACACATTCTGCTGATGAAGATAGACCATTTCAGTGTCAGTACTGCAGTCGAGGTTTCTTGATGAACTGTGAATTGATCAAACATACTAGAACACATACTGGACAACGACCATACATATGTGATATCTGCAGTCGTGGTTTCTTAGACTCGAGCAAATTATCACGCCATAAACGAATCTGCAGTGGAGATTTACCATTCAAATGTACTCTCTGCGATAAAGCATATCCAATGCCAGGCGAGCTCAGACGACATCAATTAACACATGTGCCAGCTAGTGAACGTCCATTCCAATGTTCCGAATGTGGTAAAAGGTTTGTAGATTCGCATCAGTTAGGGTTACATATTCGTACTCACTCTGAAGATAGGCCTTTTGGTTGTTCAGTATGTCCTAAGACATTCCGTACACAGCGGAATCTAAATCGTCATTGTGTAACTCATACAGGTATGAAGTTATATCAATGTGATgtgtgttataaaaattatgcaGATGGAAGTTCTTTAAGACGTCATAAAATGACACACActgtgtaa
- Protein Sequence
- MDATTNSFDSSHEGFGNLPVNVELEPSQKLKDSEDESDESELDAEEYHIEPGEIKCSDNAIRDETVKTEKKEKTYRPKTIKVHNTCELCGKKFDRLGQFLVHKKIHAGEKVFTCEICSKSFLIQSKLNTHMVVHSDVKSFSCDFCGKRFKTSPQMIKHRSSVHLGIKPYKCEFCDKCYYNTNHLRDHLVSHTGERNHKCMYCDRTFGRYYSLMKHKRIHTGETPYHCDQCERKFKTYGSMKAHTASHTEDRDFPCSQCDRSFKTHRARRAHEKTHSADEDRPFQCQYCSRGFLMNCELIKHTRTHTGQRPYICDICSRGFLDSSKLSRHKRICSGDLPFKCTLCDKAYPMPGELRRHQLTHVPASERPFQCSECGKRFVDSHQLGLHIRTHSEDRPFGCSVCPKTFRTQRNLNRHCVTHTGMKLYQCDVCYKNYADGSSLRRHKMTHTV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01343318;
- 90% Identity
- iTF_01343318;
- 80% Identity
- -