Basic Information

Insect: Sialis lutaria
Gene Symbol: -
Assembly: GCA_949319165.1
Location: OX439233.1:33905457-33907485[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 3.4 1.8e+02 3.1 5.0 1 23 95 118 95 118 0.90

2 13 0.00033 0.018 15.7 1.3 1 23 124 146 124 146 0.98

3 13 0.00099 0.054 14.2 0.6 3 23 184 204 183 204 0.98

4 13 0.032 1.7 9.5 0.4 5 23 214 232 211 232 0.92

5 13 0.00018 0.01 16.5 1.3 1 23 238 260 238 260 0.97

6 13 1.2e-05 0.00065 20.3 2.9 3 23 271 291 269 291 0.96

7 13 3.8e-07 2.1e-05 25.0 0.4 2 23 298 319 297 319 0.96

8 13 5.6e-07 3e-05 24.4 3.7 1 23 325 347 325 347 0.98

9 13 3.5e-06 0.00019 21.9 1.9 1 23 353 375 353 375 0.99

10 13 7.1e-05 0.0038 17.8 8.7 1 23 381 403 381 403 0.99

11 13 3.2e-05 0.0017 18.9 2.8 1 23 409 431 409 431 0.94

12 13 0.00015 0.0082 16.8 1.1 2 23 438 459 438 459 0.97

13 13 1.7e-05 0.00093 19.8 0.2 1 23 465 487 465 487 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	3.4	1.8e+02	3.1	5.0	1	23	95	118	95	118	0.90
2	13	0.00033	0.018	15.7	1.3	1	23	124	146	124	146	0.98
3	13	0.00099	0.054	14.2	0.6	3	23	184	204	183	204	0.98
4	13	0.032	1.7	9.5	0.4	5	23	214	232	211	232	0.92
5	13	0.00018	0.01	16.5	1.3	1	23	238	260	238	260	0.97
6	13	1.2e-05	0.00065	20.3	2.9	3	23	271	291	269	291	0.96
7	13	3.8e-07	2.1e-05	25.0	0.4	2	23	298	319	297	319	0.96
8	13	5.6e-07	3e-05	24.4	3.7	1	23	325	347	325	347	0.98
9	13	3.5e-06	0.00019	21.9	1.9	1	23	353	375	353	375	0.99
10	13	7.1e-05	0.0038	17.8	8.7	1	23	381	403	381	403	0.99
11	13	3.2e-05	0.0017	18.9	2.8	1	23	409	431	409	431	0.94
12	13	0.00015	0.0082	16.8	1.1	2	23	438	459	438	459	0.97
13	13	1.7e-05	0.00093	19.8	0.2	1	23	465	487	465	487	0.91

Sequence Information

Coding Sequence: atgatAGTGGCTTGTACTTCTCTACAGATTTCTGATGTAGATGAGCTACCAAAAGCAGTTTGTGAACAGTGTTGTTTAAAATTTCAGATGTTCTATCGTTTTAAACAACAATGTGAAAAATCAGAAGCAACTTTAAGACGTTATCAAATTACATTGaatACGAATGCAATAAAAGAAGAACCAGTATTAGAAGATAAAGAAAACTTAAGTGACAATGATTGCTGTAGCAATAATGATAACGAATTAGAACCATTTGTTAAACTAGAAGAACAACTAAAAACTTATCATTGTGAACTTTGCAACACTGATTGCGAAACCGAAAATGATTTAATCAACCATTGCAATAAAGAGCATAATCAGAAAAAGAAGTATTCATGTTTATCATGTAAAAATGTATTCTACAgtcCAGTATTATTAAGAAAACATCAAAAGACACATATTTTAGCGAAAAGAAACagcaataaaaagtttaaaaagaaaagATCGATAACCCAGAAGCCTGTTTTAACTCAAGAATCTCCTAATGCTGATTCCGATATTGTACATGGTTgttcattttgtaaaaaatcgttTATTTATGAAGAAGATTTGAAATTGCATGAATCTACTCATTCTGATTCAAATTCGAACGAATGTATCGTATGTTCCAAAAGTTTTGCGAcTCGACTGATATTAAAACGCCATATAAAAATACACATGAAAAGTAAACCGTTCATTTGTCAAGTCTGTAGAAAAGGTTTTTTAAATTCACGTAATCTGAAAGAACACATGCGCCAACATACAGGAGAAAAAAAAGAACGTAAACACTTGTGCACAGAATGTGGGCAACGatttCATAATCCAGCGTATTTAAAAGTTCACATGAGATCTCATACCGGAGAAAGGCCATTAATGTGTGCAACTTGTGGAAAATCATTTTCTCGTCCGAATTCTCTACGAAGACACATTATTAGTCATTCTGGTGAAAAAAGACACAAGTGTCATATTTGTGGAAAAGGTTTCATTCACTCGACAAACCTTATCCTCCACATTAGAGTACATTCAGGTGAACGCCCGTATGAATGTTCTGAATGTGGAAAAGCATTTAAACATTCAACAGCACGAGATAACCACATGAGGACCCATACAGGCGCTAGACCTTACACATGCACGTTTTGTTCAAAGTCATTTGCGCAGAAACAGTGTTTACAACGTCATCACCGTACCCACACCGGAGAGAAACCATATTCTTGTCAGCATTGTGACCGTAGTTTTGCCAGTTCAAGTGAACTGAAATTGCACGATCGCAAACATACAGGAATAAAAAAGAATGTGTGTGTCACGTGCGGTAAAGATTTCCCAACACCTTGTCATTTGGTGATACATACGAGGATACATACTGGAGAGAAACCGTATGTCTGTGGCGAGTGTGGTAAAGCATTCGCGTACAAGGAATCATTGAATAAACATGACAAAGTGCATCAGAAACAAAAAAGTTTAATGGAAGCTAAACTTGGAcagcatttattataa
Protein Sequence: MIVACTSLQISDVDELPKAVCEQCCLKFQMFYRFKQQCEKSEATLRRYQITLNTNAIKEEPVLEDKENLSDNDCCSNNDNELEPFVKLEEQLKTYHCELCNTDCETENDLINHCNKEHNQKKKYSCLSCKNVFYSPVLLRKHQKTHILAKRNSNKKFKKKRSITQKPVLTQESPNADSDIVHGCSFCKKSFIYEEDLKLHESTHSDSNSNECIVCSKSFATRLILKRHIKIHMKSKPFICQVCRKGFLNSRNLKEHMRQHTGEKKERKHLCTECGQRFHNPAYLKVHMRSHTGERPLMCATCGKSFSRPNSLRRHIISHSGEKRHKCHICGKGFIHSTNLILHIRVHSGERPYECSECGKAFKHSTARDNHMRTHTGARPYTCTFCSKSFAQKQCLQRHHRTHTGEKPYSCQHCDRSFASSSELKLHDRKHTGIKKNVCVTCGKDFPTPCHLVIHTRIHTGEKPYVCGECGKAFAYKESLNKHDKVHQKQKSLMEAKLGQHLL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01343320;
90% Identity: -
80% Identity: -