Slut010374.1
Basic Information
- Insect
- Sialis lutaria
- Gene Symbol
- -
- Assembly
- GCA_949319165.1
- Location
- OX439238.1:8285744-8288314[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00075 0.041 14.6 2.2 1 23 232 254 232 254 0.98 2 12 0.46 25 5.8 0.2 2 23 257 279 256 279 0.93 3 12 3.9e-05 0.0021 18.6 3.9 2 23 323 344 322 344 0.98 4 12 0.0017 0.091 13.5 0.2 1 23 350 372 350 372 0.93 5 12 1.6e-06 8.5e-05 23.0 0.6 2 23 379 400 378 400 0.97 6 12 0.00023 0.012 16.2 4.3 1 23 406 428 406 428 0.98 7 12 7.5e-07 4e-05 24.0 0.7 1 23 434 456 434 456 0.98 8 12 2e-06 0.00011 22.7 0.3 1 23 464 486 464 486 0.98 9 12 5.3e-05 0.0029 18.2 0.3 1 23 492 514 492 514 0.93 10 12 6.6e-07 3.6e-05 24.2 0.3 1 23 520 542 520 542 0.98 11 12 4.7e-05 0.0025 18.4 0.2 1 23 548 570 548 570 0.98 12 12 3.9e-05 0.0021 18.6 1.9 1 23 576 598 576 598 0.97
Sequence Information
- Coding Sequence
- atggatcaaaataattacaacttCTTATGTCGCTTATgcgctattaaaataaatatgactgGGTATAATATCTTCTCAAATGATGATGCCAATAGGCAAATTCTTCGAAAAATATCGGTTTTACTTCCAGTGCAGATAACACAATCAGATAATCTACCTAAAATGATCTGCAATGATTGCAATTctaaattaaactatttttatgaatttcgAGATAAAGCGCTTGAAACTGAGCAGATACTCATAAGTTTACAAAGTGAGATAACACAACCAAACGTACCGAATGGAAAATCAGATTCTCATTTCAATTCATTAAAGTCAAATGATATTCAAGATCGATCTAAATCAAAATTGAGTAAAGAAAGGAAGAAGACGTTTCAGAAGCAAAGGATAATGGAATCATCATTTTCTGACGATGATGATGACGATTCTGTTGATAATATAGATATGAGTGAttcagaagaaaataaaaatatcaaatctgaATATTGTGAAATCGTACCGGATATTGAATTTGTTaatagcAACAGTATTCAAGATTCAGATAATATAATGAACATACCTCTAAGTAAGTTAGCAagtagtttaaataaaaactatataatagaAGAGCAACTGAATGATATTATTCATAAACTAATCAAGCTAGAACCTCAGTCTGGATCGTTAGATGAGAATTCTCAAAGCGCATATTACTACTGTGATTTTTGCACAAAATCTTATGAGGATaaagataaatttttaatacattaccGAGAACACTGGCTGAAATGCAATAAATGTACTGGTTTGTTTAAAGATCGTATATCTCTAGATTTGCATGTCGAAAGCGTGCATTGTGAGATAACTATACATATAGGCGCAAAAGATAAAGATAATGCAAAATGTGATATGTCCACAGAAAAgGTATCAAATACAGAAAACGGTACCTCAAAAAGAAGTAAAAAAGTATCTTTGGCTTCTAAAACGTGTAAAGAATGTGGTAAAGTTTGTCGTAATCTCTCTAGACTTAGTGAGCATATGAGAAAGCATACAGGGGAACAGCCGTTCAAATGTAAAATATGCGGGAAAGGTTTAAAATCTAAAATGGGTTTAGATCAACATGAAGCTGAGCACACAGgtCAGTACGCACTATCTTGTAAACTATGTGGAAAAGGTTTCCAAAGTCAAAGTTACTTAACCGTTCATCAGCGAGTTCACAACGACGCTAGACCGTATAAATGTACAACTTGTGAACAATGTTTCAAATCGAAACAGTCATTGATAGACCACGAGAATCGGCACTTAGGAAACAAACCATACGCATGCGAGCAGTGCGGTAAGACTTTCATTACCAAAGGCTTAGTGAAAACGCATCAAAGAACTCACAGCACAGAAGACACCCGGCAGTACCCTTGCTCGGTTTGTAACAAGAAGTTTGTATCTAAAGGATATTTAGCTACACATATCAAGATTCATACAGGAGAACGTCCGCATGTTTGTGAGgtTTGCGGTAAAGGGTTTGTAACGCAACGGGATCTCCGACTACATTCTATACTGCATACAGGCGAGAAGCCTTTTGTTTGTGAGACGTGCGGAAAAGCATTTGCTCGTAAGGATGCTTTAAGATTGCACACGCGACAGCATACAGGAGAACGGCCGTATGTATGCGAATCATGTGGTTCTAGTTTTACACAGTACGGTCCGTTAGCAAAACATATGAAAATGCACGCAAGAGGGAAACAGTTTGATTGTACGTAttgtgataaaaaatttataactcgACATGCATTAGGTGCACATGAAAAAACGCatgaaaaactttaa
- Protein Sequence
- MDQNNYNFLCRLCAIKINMTGYNIFSNDDANRQILRKISVLLPVQITQSDNLPKMICNDCNSKLNYFYEFRDKALETEQILISLQSEITQPNVPNGKSDSHFNSLKSNDIQDRSKSKLSKERKKTFQKQRIMESSFSDDDDDDSVDNIDMSDSEENKNIKSEYCEIVPDIEFVNSNSIQDSDNIMNIPLSKLASSLNKNYIIEEQLNDIIHKLIKLEPQSGSLDENSQSAYYYCDFCTKSYEDKDKFLIHYREHWLKCNKCTGLFKDRISLDLHVESVHCEITIHIGAKDKDNAKCDMSTEKVSNTENGTSKRSKKVSLASKTCKECGKVCRNLSRLSEHMRKHTGEQPFKCKICGKGLKSKMGLDQHEAEHTGQYALSCKLCGKGFQSQSYLTVHQRVHNDARPYKCTTCEQCFKSKQSLIDHENRHLGNKPYACEQCGKTFITKGLVKTHQRTHSTEDTRQYPCSVCNKKFVSKGYLATHIKIHTGERPHVCEVCGKGFVTQRDLRLHSILHTGEKPFVCETCGKAFARKDALRLHTRQHTGERPYVCESCGSSFTQYGPLAKHMKMHARGKQFDCTYCDKKFITRHALGAHEKTHEKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01343305;
- 90% Identity
- iTF_01343305;
- 80% Identity
- -