Slut004238.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sialis lutaria
Gene Symbol
-
Assembly
GCA_949319165.1
Location
OX439233.1:25241728-25245052[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0012 0.067 13.9 0.8 1 23 135 157 135 157 0.97
2 16 0.011 0.61 10.9 7.7 2 23 166 187 165 187 0.98
3 16 1.9e-06 0.0001 22.8 2.2 1 23 193 215 193 215 0.98
4 16 0.0023 0.12 13.1 0.5 1 21 221 241 221 242 0.92
5 16 8.2e-06 0.00045 20.8 0.3 1 23 249 271 249 271 0.95
6 16 0.0011 0.062 14.0 0.5 1 23 423 445 423 445 0.96
7 16 0.002 0.11 13.3 3.0 1 23 451 473 451 473 0.97
8 16 3.5e-05 0.0019 18.8 3.1 1 23 479 501 479 501 0.97
9 16 3.5e-05 0.0019 18.8 0.8 1 23 507 530 507 530 0.95
10 16 0.0011 0.059 14.1 1.0 1 23 542 564 542 564 0.97
11 16 0.00051 0.027 15.1 0.3 2 22 572 592 571 592 0.95
12 16 8.1e-07 4.4e-05 23.9 1.6 1 23 600 622 600 622 0.96
13 16 0.0063 0.34 11.7 3.8 1 21 628 648 628 650 0.94
14 16 0.00017 0.0091 16.6 1.0 5 23 660 678 656 678 0.93
15 16 4e-07 2.2e-05 24.9 0.2 1 23 684 706 684 706 0.99
16 16 1.7 92 4.0 1.2 1 23 711 734 711 734 0.93

Sequence Information

Coding Sequence
ATGGAAAATACTGAATTAAATTTTGATCGGCTTTGCCGAGCTTGCAAAAATGAAtcggaaaatttaaaatcagtttTCGAAATATTTGATGTTCCGGATAAACCTCGAATTGCAGAAATGTTAATGGCTTGTGCTTCTGTACAGGTAATGAAAGGAGATGGACTGCCAAATTCTATGTGTATGCCTTGTATTAGCCAGCTTAAGGATGCTTACACGTTTCGAAAACAATGCGAACTTACTGACAATTCATTACGGGATTACATGCGACAAAAATGTATCAAACAAGAAGTACCTACAGATGAAACTggtgaaattattgatattgctTCTGTTATTAATAACATGATTGATGTGAAACAAGAAACAGACAGTTTACAAGTATTAGTTaatgaaaatgttattttttcttgtaCCATTTGCAATAAACAGTTTGCATCTCCAGCAGgcttaaaatttcataaacgaAATCATGCTGAATACggagaaaatttaaacaaatgtcACGTTTGTAATAAAGAATATTCGTGTCTCAGTCACTTGCAACGACACTTACGTTTACATTACCCACATAAAATATACACTTGTaaaatttgcaataaatcatTGAGTCGTTTGGAACATTTAAAACGTCATATGGTCATTCATCTCAAGACTAAGCcacatatttgtaaaatatgtaaacGCGGCTTTAATAAAGAGGATAACTTGTATGCTCATGAACAACGTTGCAAAGGACAGCGACCACATATATGTCCAATTTGCAACCGAGGATTTAATCGTGAGGATAGTTTACAAGTTCATATGAGTGCTCATGATTCCAGTACTGAATCTAAACCAATGTTAGATTCATTAGATGACATCgagaattatatacatatagaaaATTATATCGGTCCTGTAGATGCTTTGGTTCAAAAAAATTTGCTAGAACCGCAAGTAAATATTACAGAAACTGATGAATTTTCAGATAACGATAAAGATGATTTTGATAGAAGAAGTGATGGTGATAGTAATGAAGTGAATGAGGATAATTCAGTTGAACAAAATGATgaagaagaaaataaaacaacCGTTAATGAAGACTCACCTGTTAATAGAAATATTGACCCAGATTGGAAACCTGAAGCTCCTGCCAAAAGAAAAAGAGGTCGACCAAGAAAAGGAGAAGTTCGTGTAGTAGCTTCAgtaattaaaaagaaaagagGTAGAAAACCAGGTGGTGGTACTATGCAAAGAACAGTaaacacaaataaaattatgagACAACATTCGTGTGATCAGTGCGAAAGGTCATTTGCCACTCCTTTAGACCTTGAAATACACAGTCTCAAGCATGCGGGTATTGAAAAATTCAATTGCAagATTTGCTTTAAAGAGTTCTTACGTGGAGACCATTTAAAGCGTCATATGATTTCACATTTGGAAAGTAAACCATTCAGTTGTGACATATGCTCTAAACAGTTTACACGTAAAGATCATATGGTCCGACATGTCAAATTACATTCTTTAGAAAGGAAATATGAATGTGACATTTGCAAGCGCATGTTTTCCAGAGAACAACTGTTAACCAAACATAAAGCCATAAAACATGGAATCGGTGAACGTGTTGTAGCAgagaaaaaattcaaatgtgaCATTTGCGATAAGTTGTTTACTACTGAAAAGTACAGAGATGTGCATATGAAGGCACACAGTGAAAAAGACAAAATTCTCAATTGTAAGACATGCGGGCAGCATTTTGAAACACGAGCAGAGCTTGTTATTCACTTAAGAACAACAAATGATTGTTCTAGAAGATTTCTATGTTCTGAGTGTGGTCAAAGATTTACTAAAAAGGACTATTTGCAAGTACATATGAGAAGACATCGTGGAGAAAAACCATTCAAATGCAGATTTTGTGATAAAGGATTTCCACGAACAACGGATCTAAAAGCACATGAAAAATGTCACACTggagaaaaaaatcatttgtgcATTGTATGTGGAAAAGGTTTTGGACGtgcGTACAAACTGACACTTCACATGAGAACTCATACGGGAGAAAAGCCGTATCAGTGCACATATTGTGACGCGGCATTCGCGCAAAGCAACGACCTGAAGGCACACATACGTCGACATACGGGCGAGCGATACCACTGCGATATGTGCTCCGAAGCATTCCTCATGGGCTATATGTTGACTCAACACAAGCGCAATGTGCACGGTGTAGAAGTGCCGCCCTCACAAAGACCGTTGCCTAGAGTGCAGGCCACTCAACCAGTTATAAAACCTGAATTAAGACGTCCAGCCGTAAGTCTGGATCCAAGATCTGGACAAATGTTCTCTTTAGCTATTTCGCAAACATTGAATCTGTTGAATAACCCTAATTatacagtttaa
Protein Sequence
MENTELNFDRLCRACKNESENLKSVFEIFDVPDKPRIAEMLMACASVQVMKGDGLPNSMCMPCISQLKDAYTFRKQCELTDNSLRDYMRQKCIKQEVPTDETGEIIDIASVINNMIDVKQETDSLQVLVNENVIFSCTICNKQFASPAGLKFHKRNHAEYGENLNKCHVCNKEYSCLSHLQRHLRLHYPHKIYTCKICNKSLSRLEHLKRHMVIHLKTKPHICKICKRGFNKEDNLYAHEQRCKGQRPHICPICNRGFNREDSLQVHMSAHDSSTESKPMLDSLDDIENYIHIENYIGPVDALVQKNLLEPQVNITETDEFSDNDKDDFDRRSDGDSNEVNEDNSVEQNDEEENKTTVNEDSPVNRNIDPDWKPEAPAKRKRGRPRKGEVRVVASVIKKKRGRKPGGGTMQRTVNTNKIMRQHSCDQCERSFATPLDLEIHSLKHAGIEKFNCKICFKEFLRGDHLKRHMISHLESKPFSCDICSKQFTRKDHMVRHVKLHSLERKYECDICKRMFSREQLLTKHKAIKHGIGERVVAEKKFKCDICDKLFTTEKYRDVHMKAHSEKDKILNCKTCGQHFETRAELVIHLRTTNDCSRRFLCSECGQRFTKKDYLQVHMRRHRGEKPFKCRFCDKGFPRTTDLKAHEKCHTGEKNHLCIVCGKGFGRAYKLTLHMRTHTGEKPYQCTYCDAAFAQSNDLKAHIRRHTGERYHCDMCSEAFLMGYMLTQHKRNVHGVEVPPSQRPLPRVQATQPVIKPELRRPAVSLDPRSGQMFSLAISQTLNLLNNPNYTV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01343288;
90% Identity
iTF_01343288;
80% Identity
-