Slut003404.1
Basic Information
- Insect
- Sialis lutaria
- Gene Symbol
- -
- Assembly
- GCA_949319165.1
- Location
- OX439233.1:134009-137112[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 9.1 4.9e+02 1.7 0.2 1 17 56 72 56 73 0.86 2 15 0.72 39 5.2 0.9 8 23 93 109 92 109 0.95 3 15 0.001 0.056 14.1 2.2 1 23 148 170 148 170 0.99 4 15 5.5e-05 0.003 18.2 1.1 1 21 189 209 189 210 0.95 5 15 0.003 0.16 12.7 0.1 1 23 227 249 227 249 0.98 6 15 4.5e-05 0.0025 18.4 0.8 3 20 254 271 253 273 0.94 7 15 7.4e-05 0.004 17.7 1.2 1 23 290 312 290 312 0.98 8 15 5.3e-05 0.0029 18.2 2.9 1 23 318 340 318 340 0.98 9 15 2.1e-06 0.00012 22.6 0.8 1 23 346 368 346 368 0.98 10 15 4.7e-06 0.00025 21.5 0.9 1 23 387 409 387 409 0.98 11 15 1e-07 5.6e-06 26.7 2.3 1 23 415 437 415 437 0.98 12 15 1.3e-05 0.0007 20.1 0.1 1 23 443 465 443 465 0.93 13 15 1.1e-05 0.0006 20.4 0.5 1 23 471 493 471 493 0.98 14 15 1.6e-06 8.9e-05 23.0 1.0 2 23 500 521 499 521 0.98 15 15 1e-05 0.00057 20.4 2.6 2 23 528 549 527 549 0.97
Sequence Information
- Coding Sequence
- atggaTACAAGTTGCCGTGTGTGTCTACGAACTGAGTTAAATCCTTCAGAAGAATTTTACGATTTGTTTTCTTTGTGTGCTTTGCTAGATTTTTCACTAACTCCTGCAAATGCAATAATGGAGTGTGCTCCTGTACTggtGAATCAGAACGATAGTTTACCGAGTTACATTTGTAGTGATTGTGTAGAAAAATTACAAACCGCATATAATTTCCGTACAGCTTGTATTGCATCAGATGCAGTTTTACATCAGGCGAATAGTTCTAATTctaaagaaaaatgttttaaatatttaaagtatCTCCACGAGCACATAAATAAACAACATCGtacttcaaataataaaaaggcaaataaaacaaatgaagaAAACgacttattaaaatattttataaaaactaaacaaaatatatcAACGAATAAATCTAAAAACAGAAAAAGGTACGTTTGTACGATTTGTAAAAAAGTCTACGAAAGATTCGGTTGTGCAAAGACTCACATACAGACACACAATCCAGAACAATTCAATCAGTTACAACTGGACACTCTGAAAGAAGAGATTGCATTTTCTTGTAACAACTGTGATAAAGAATTTACAAGTTCTGGTGCATTAAAAGAACATTTATGTAATAAAAGTGGTTGCAAGGAGAATAACGTATCAGGAAACCATGAAACCAAGTATCGCTGTGTACTCTGTAAAGCGCAGTTTGATGAAGAGGCGCAACTCAGGGAACATATCCGTTTACACACAGGTGAAGATTGCAATGACTGTGGCAAGAATTTCCCATCAAAAGACCTTctaaacaaacacgtgtgtgaacAGAACTCTGTAGATACAACAGGGGAGGAGGGGGCAGCGCCTACCGTGTACAGCTGTACAACGTGTACCAAGCTATTCACAAACAGAGCATCACTAGACGTACACTTGCGCAGCCACACAAACGAGCGCCCATTCACGTGCGACTTGTGCAACAAAGGCTTCAAGCAGAAGGCACACATGGTGACGCACCGTAAGATACACACCGGAGACAAAGCGTTCAAGTGTGAGGCGTGTGGAAAGTCTTACATAACCAACAGCGAGCTGACCAAACACAAGAGGGGTCACTCGTTGAGTTCTGGCGCTAAAGACAGACAAGTACACAAGAAGGCACAACAGCAgtttatgtgcgaagtgtgTCCAAAGaCGTTCCCGTACCGTTACATGCTAGTAAAGCACACTCGCTCGCACACGGGTGAAACCCCGTTTGTGTGCGAGGTGTGTGGCAAGGCGTTCAGGCAGCACGCGCATCTGAGAGTGCACCTGCGTACTCACACCGGGGAGAAGCCACACGCTTGCAATGTCTGCGGTAAACCGTTCACGACGGCGACCGAGATGCGAGCACACATGGTCGCTCACACGGATGCGCAGCCTTTCCCGTGCTCTCTGTGTGGTAAAACGTTCAAATGGAAGATTGCTTTGTGGCGACATATGAAGCGACACTCTGGCGATAGACCCAACAAGTGCACGTACTGTGATAAAACATTCATAGAGTATGGTTCGCTACGGAGACATCTGAGAGTCCACACAGGAGAACGTCCACAGGTTTGTAAAATATGTGGAAACACGTTCAAAGAGAGCACGCATCTGAAGACCCATATGAAGATTCATAACGACATCATTGTTTATACCAAACTAGAGAGTGAGGCACCAACAGTCGAGTCAAACGATATCGAGATAGAGGATCACAAATGGAAAGATGTCAAgatgatacagtttatttaa
- Protein Sequence
- MDTSCRVCLRTELNPSEEFYDLFSLCALLDFSLTPANAIMECAPVLVNQNDSLPSYICSDCVEKLQTAYNFRTACIASDAVLHQANSSNSKEKCFKYLKYLHEHINKQHRTSNNKKANKTNEENDLLKYFIKTKQNISTNKSKNRKRYVCTICKKVYERFGCAKTHIQTHNPEQFNQLQLDTLKEEIAFSCNNCDKEFTSSGALKEHLCNKSGCKENNVSGNHETKYRCVLCKAQFDEEAQLREHIRLHTGEDCNDCGKNFPSKDLLNKHVCEQNSVDTTGEEGAAPTVYSCTTCTKLFTNRASLDVHLRSHTNERPFTCDLCNKGFKQKAHMVTHRKIHTGDKAFKCEACGKSYITNSELTKHKRGHSLSSGAKDRQVHKKAQQQFMCEVCPKTFPYRYMLVKHTRSHTGETPFVCEVCGKAFRQHAHLRVHLRTHTGEKPHACNVCGKPFTTATEMRAHMVAHTDAQPFPCSLCGKTFKWKIALWRHMKRHSGDRPNKCTYCDKTFIEYGSLRRHLRVHTGERPQVCKICGNTFKESTHLKTHMKIHNDIIVYTKLESEAPTVESNDIEIEDHKWKDVKMIQFI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -