Slut002888.1
Basic Information
- Insect
- Sialis lutaria
- Gene Symbol
- -
- Assembly
- GCA_949319165.1
- Location
- OX439232.1:26894854-26897771[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0087 0.47 11.2 1.7 1 21 45 65 45 69 0.90 2 23 0.015 0.81 10.5 3.0 3 23 90 111 88 111 0.95 3 23 0.00047 0.026 15.2 2.6 1 23 184 207 184 207 0.93 4 23 0.0024 0.13 13.0 1.8 1 23 242 264 242 264 0.98 5 23 3.5e-06 0.00019 21.9 2.6 1 23 270 293 270 293 0.95 6 23 5.1e-05 0.0028 18.3 1.0 1 23 299 321 299 321 0.98 7 23 9e-05 0.0049 17.5 2.2 1 23 327 349 327 349 0.94 8 23 0.00011 0.0061 17.2 0.2 1 19 355 373 355 374 0.97 9 23 2.6e-05 0.0014 19.2 2.7 1 23 383 405 383 405 0.98 10 23 2.5e-05 0.0013 19.2 0.7 3 23 413 433 412 433 0.98 11 23 0.0066 0.36 11.6 1.0 1 23 511 533 511 533 0.95 12 23 0.0013 0.069 13.9 0.3 2 23 544 565 543 565 0.96 13 23 0.008 0.44 11.3 2.1 3 23 571 592 569 592 0.94 14 23 0.0079 0.43 11.4 0.2 1 23 603 625 603 625 0.98 15 23 0.00015 0.0081 16.8 3.1 2 23 632 653 631 653 0.96 16 23 0.0097 0.52 11.1 2.9 3 23 659 680 657 680 0.94 17 23 0.064 3.5 8.5 0.2 2 23 696 719 695 719 0.92 18 23 8.2e-06 0.00045 20.8 2.4 1 23 725 747 725 747 0.97 19 23 4.6e-05 0.0025 18.4 2.1 2 23 752 773 751 773 0.96 20 23 0.09 4.9 8.0 2.1 1 23 779 801 779 801 0.97 21 23 2.3e-07 1.3e-05 25.6 0.4 1 23 807 829 807 829 0.99 22 23 0.0057 0.31 11.8 2.4 1 23 835 858 835 858 0.96 23 23 1.1 60 4.6 1.0 2 23 860 882 860 882 0.96
Sequence Information
- Coding Sequence
- ATGTCAACTGTAAAGTCTCAACAGACAACACTTTTATTAAACTCATCCGAGTCAAGGTTGGTGAAAAATGAGTCTGCAGATGAATCTGGCGATGAAGATGATATACCTCTTAGTAAaagattagtaaaaaaatttaaatgcgcaacatgtaaagaaatatttaaaaccgAAAAGAAATTACAACAACATGGACTCCGTACTAAACATATTGTGCGTTCCGATACAAGAATACGGCGGAAacaatctgaaataaaatacagAATATTTTGTGACATCTGCGGATCTGGATTTACACGTAACTGCGATATGGTTAAGCATAGACGGCATGTACATGCAGATTTACAGAGCTCAGGTAGACGTTCTGTTGATGTTAAATCAGAACCTGATGATTCAGAATCATTATCCTGTACATTAGATCCAAATGTAGTACTGATGGATACACTCAGGTCGTCAGTAATGCAAACATCAGAAGTAAAACGAGAAGTCGTACCTTTAGTTTTATCACAATCACCAATCAAACgtagaaaaaaatcagaaatagtTCCGACACATTTTTGTGATTTATGTCCGAAAGGTTTCACAAGACGATACGACATGCGTAAACATCGGTTACAAGTACACGGAGATGTACCAAACGAAACAGAAGATATGCGTAAAACAAAAGCTCAAAAAAATCTGGAGTTATTAGAACGTTGTAAAATTGAATTCGAAGGTCGCACACACTACAAATGTGAAATATGTGATCGTATTGTACATATGTCTTATAATTTTCTGCGACATCAAACTGTACACACGGGGGTCCGGGCATTCTTCTGTCATCTGTGTGGAAAGAGTTTTCGTATGTCGAGCGGTCTCAATCGTCATATCAAAGAGTCTCATTTCGGAGTGAAGAAGTTCCCTTGCGATGAATGCGGTCGATGTTTTGCTTCAAAGAGTACCAGAGATGATCACATGAACATCCACTGGGGCCTACGTCCATTTGTGTGCGATACTTGTGGTAAAGCATTCAAGTCTAAAGCCTCTTTACATGTTCATAAGACATTTCACACAGACGACAAACCATTTGTATGTGCAACATGTGGGAAACGCTTCAGACGTAACCAGGAACTTAAAGTACACGGATGGTTGCATACAGGATACAAACCTTATGCTTGTCCTACCTGTGGTAGTTGTTTTCGTCTATCTCAGGATCTCAAACGGCACCAAAAGACTCATGAGAAAGGAAATGAAGTCGCTTGCGAAGAGTGTGGAAATACATTTAGTCAATTGCGTTATCTCCGTAATCACCTGAAAACACATCGGAAAGCCGAAATGAAGCTTGCCGCTGCAGTCGCGGCCGGCGTTATTGATAATGGTCTACATCTACAACAATGCGAAGAAGAGACTATCAAATATGTGCGGATTAAAACAGAACCGGTTTGCATTAAACAGGAGTTGTGTGATGATACATCAATTGTACAAGTTATAAAGATAGACGCTGATAAAAGTGAATGTAAAACTGAACCGAATACGCATGAAGCCTTGCCCATATATTTATGCCAGAAGTGTGAATTGACATTTGACGATGACAGCAGTTTTACATCACATCTTCAGCAGCATTGTGAAGACAGAAAACAAGATATAACATTGACGTGTCCGATATGCACGCAGATTTTTAGTTCTGAATCTGATTGGTTCACGCATGAAAAACAGCATAGCCCACAGATAGCTTGTGACAAATGTGGAAACCGTTACTCCCATAATGACTTCTTAGAAAGGCACAATCAGAAACGCCATTTAAAAAAGAACACAGTAACTCTGTTTCCTTACCAATGTTATTTGTGTGAAGCAATTTTCCCAAAAGAAGATCTTCTTAAATACCACATTTTGAATCATAATTCTAAAGAAAAATGTGTGTGTGAAATTTGTTTGAAATCATTTAACAGAACTTGTAATTTGAATGCACATATCATTACACATACGGTTGATTTGTTTTGTCCAGTGTGCTGTCGCAGCTTCACGTCTCAATTCAAATTAGAAAACCACATGTCGAATAGTCATACCGTTGTAGAAGTAGAAGAAGCTAAACTGTCTCCAAGATCTGTCGTATGTCCATTTGATAGTTGTGACATAACATTTTCTTCGCGTTTGCAATTGTATGAACATAAAAAAgatcatttaaatataattgaacatCCATGCAATTACTgttcgaaaaaattcaaatcagCATCGTATCTTGCAACCcatttaaaaatacatgaaGCAGACACAGAATGTAATGTATGTGGAAAACatttttctagtaaaaaaacattattggaGCATGAAAGATTGCATACAGGAGTAAAACCATACACATGTAACATATGCAAAGCACAGTTCCGTTGTCAGAGCAGTTTGGTTGGACATCGTACAATACACAGTACAGAAAGAAGATATAGGTGTGGCATTTGCGGTCGTGCATTTGCTAGGTCTAACTACCTGAAAGAACATCTACGTACTCATCGTAATGATAAACCGTACATGTGTCAGTACTGCAACGTCTGCTTCACTCAGGCAAATATACTCAAGACGCACATAAACTTAAAACACCGCACATGTTCAGTTTGCAACAGCATGGTTGGTAACAGTGCTTCAATGCGTCAGCATGTTCTAACATGCCATGCTGAGTCTAAATGTAATGTtgttaaaatggaaaattaa
- Protein Sequence
- MSTVKSQQTTLLLNSSESRLVKNESADESGDEDDIPLSKRLVKKFKCATCKEIFKTEKKLQQHGLRTKHIVRSDTRIRRKQSEIKYRIFCDICGSGFTRNCDMVKHRRHVHADLQSSGRRSVDVKSEPDDSESLSCTLDPNVVLMDTLRSSVMQTSEVKREVVPLVLSQSPIKRRKKSEIVPTHFCDLCPKGFTRRYDMRKHRLQVHGDVPNETEDMRKTKAQKNLELLERCKIEFEGRTHYKCEICDRIVHMSYNFLRHQTVHTGVRAFFCHLCGKSFRMSSGLNRHIKESHFGVKKFPCDECGRCFASKSTRDDHMNIHWGLRPFVCDTCGKAFKSKASLHVHKTFHTDDKPFVCATCGKRFRRNQELKVHGWLHTGYKPYACPTCGSCFRLSQDLKRHQKTHEKGNEVACEECGNTFSQLRYLRNHLKTHRKAEMKLAAAVAAGVIDNGLHLQQCEEETIKYVRIKTEPVCIKQELCDDTSIVQVIKIDADKSECKTEPNTHEALPIYLCQKCELTFDDDSSFTSHLQQHCEDRKQDITLTCPICTQIFSSESDWFTHEKQHSPQIACDKCGNRYSHNDFLERHNQKRHLKKNTVTLFPYQCYLCEAIFPKEDLLKYHILNHNSKEKCVCEICLKSFNRTCNLNAHIITHTVDLFCPVCCRSFTSQFKLENHMSNSHTVVEVEEAKLSPRSVVCPFDSCDITFSSRLQLYEHKKDHLNIIEHPCNYCSKKFKSASYLATHLKIHEADTECNVCGKHFSSKKTLLEHERLHTGVKPYTCNICKAQFRCQSSLVGHRTIHSTERRYRCGICGRAFARSNYLKEHLRTHRNDKPYMCQYCNVCFTQANILKTHINLKHRTCSVCNSMVGNSASMRQHVLTCHAESKCNVVKMEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -