Slut004603.1
Basic Information
- Insect
- Sialis lutaria
- Gene Symbol
- -
- Assembly
- GCA_949319165.1
- Location
- OX439233.1:33766342-33773807[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00073 0.04 14.6 0.3 1 23 123 146 123 146 0.91 2 19 0.00044 0.024 15.3 4.4 1 23 146 169 146 169 0.94 3 19 2.5 1.4e+02 3.5 0.4 2 23 219 240 218 240 0.93 4 19 6.2e-06 0.00033 21.2 0.5 1 23 245 267 245 267 0.98 5 19 2.9e-06 0.00016 22.2 2.2 1 23 273 295 273 295 0.98 6 19 1.8e-06 9.6e-05 22.9 1.2 1 23 304 326 304 326 0.96 7 19 3.6e-05 0.002 18.7 0.1 2 23 333 354 332 354 0.95 8 19 9.4e-07 5.1e-05 23.7 1.4 1 23 360 382 360 382 0.97 9 19 3.3e-08 1.8e-06 28.3 0.9 1 23 388 410 388 410 0.98 10 19 1.9e-06 0.00011 22.7 0.7 1 23 416 438 416 438 0.98 11 19 0.025 1.4 9.8 4.4 1 23 444 466 444 466 0.98 12 19 9.6e-06 0.00052 20.5 0.8 3 23 474 494 473 494 0.98 13 19 2.6e-05 0.0014 19.2 0.9 1 23 500 522 500 522 0.95 14 19 3.9e-07 2.1e-05 24.9 0.7 1 23 532 554 532 554 0.98 15 19 9.3e-05 0.0051 17.4 3.7 1 23 560 582 560 582 0.98 16 19 0.00024 0.013 16.2 3.1 1 23 587 610 587 610 0.96 17 19 9.3e-05 0.005 17.4 2.1 1 23 616 639 616 639 0.98 18 19 2.2e-05 0.0012 19.4 1.6 1 23 645 667 645 667 0.98 19 19 5.3e-06 0.00029 21.4 3.4 1 23 673 696 673 696 0.98
Sequence Information
- Coding Sequence
- atgaataaaacaacGTGTGATcgttataattttgataaaatatgtaGAACTTGTCTAATCGTAGACGAAAATTTAGAATCTATTTATgaagaaaatatatacaatatgatAGTGGCATGTACTTCGAttcatgtATCTAAATCTGACGGACTTCCAAGCACAATATGTGGTAATTGTACACAACAAattgaaatgttttataaatttaaattgaaatgtgATGAATCAGAAAGTGTACTGCAAAAAATGAAGAAAGATATTTCGGAAGAGATTCCAGAACTTACGTCTCCAGTGAAATGTgaacaaaatgatattttaccATACGAAGatatAGAAGAAGCACATTATGAAAGCGTTAGCGTTATCTACCAATGTTTTGattgtaatataatattcaatacAGAATCAGAATTGTCTACACACAATAACGATAACCATTTCTGCAACATTTGCAACAAATGTTTTACAGggTCTAAATCACTGGAACTACATAGGAAACAAAACCATAAGCCAGAAGTTAAAATTAAgaagaaaaacaaaattaaaaatgaAAAGAAACGTGATATAAACATACCATCAGATTTACCACCTGACTTCACAGAATTTTTAGAAAAAGATATTAATTCAATAGAAACTACGGAAGGGGAACATTGGCAATGCAAAGATtgcaaagatatttttttatcagaatttgatttaaatttacacGAAACTACACACACAACGAGTGATTTTGTTTGTGCTGTTTGTCCAAAATTTTTTGATAccCGTCAAATGTTAAAACgccatattaaaatacatatgcaAAAGAAACCACACGTCTGTAAAGTTTGTAACAAGGATTTTGCTGAATCGTATGccttaaaaaaacatatgcgaCGTCACACGGGAGAACCGaggataaaaaaacacttttgtgAAGAATGCGGAAAATCTTTTGGTGAGCCATATTATCTTAATGTTCATATGAGGAAACATACGGGTGAAAGACCATTAATTTGTGAACTATGTGGAAAGAGATTTGCAGATCCACGCTCATTGAAAGTGCATTCAATGTCGCATGCAGGCATCAAACCTCATATGTGTAACTTTTGTGGgaaAAGTTTTGTACAATTAGTGAACTTAAAGAAGCATATACTCGTCCATACAGGAGAAAAACCATTTATCTGTTCAGAATGCGGTAAGAGCTTCACACAGTCGTCAACATTGGATAAACACATACGCATGCATTCAGGTCTGCGTCCGTACAACTGCCAGTTGTGTGAGAAAACATTCAGCGAGAAGAGCTCGCTCGTTCAACACATCCGTGTCCACACGGGTGAGAAACCGTATGTCTGTGAACAATGTTCTTGTTGTTTTGCTAGCTTGAGTGAAATAAAGTTACATAACCGGAAACATACAGGAGTTAAGAAGAATATTTGTAGTATTTGTGAGAAAGATTTTGCAACGCCTAGTGGTCTTTGTACTCATTTAAGAACGCATACTGGAGAAAAACCGTACCTTTGTGCCCAGTGTTCTAAAATGTTTTCTGATAAGGGGTCGTTGAAAAAACATGAAAAGGTTCATATTAATACTCATTCAGGTGAAAGACCGTACAAATGTGAATTATGCGGGAAACAATATTCACGATCTGGTAATCTTAAGGAACATATGTATGTTCACGCTGGAATCAAACGTTTTAAGTGCCACGTATGTGAACGACCTTTTGCTCAGTACGCACATTTATTTCAGCACTTGAAACTACACACAGGACGTACTTTCAAATGtgaattttgtgaaaaaatgttTACGACAAGATCAGACCGTCGCAAGCACGTTACTCGTTTACATGAAGAAAAACAAACATTTCAGTGTAGCCAGTGTGAAAAGTGTTTCAGTGATAGAGTTTATCTTGGCCTTCATGAACGGACAGTCCACAAAGGCCACGCACCGCATAAATGTGATATGTGTGACAGAAGTTTTGGAAGAAAGGGAACTCTAGATGTACATCGAAGAGTACACACCGGTGAGAAACCGTACCGTTGTAATCTTTGTGGAAAACAATTTACTCAACATTCGCCGTTATCCAGACATCTGAAAACACAACATGCAAATGAAGTTCATGATAATCAGGTGCCAGATTATACGTTTGCTGCGGCATCAaaagcaaaatataaaaataatttgtaa
- Protein Sequence
- MNKTTCDRYNFDKICRTCLIVDENLESIYEENIYNMIVACTSIHVSKSDGLPSTICGNCTQQIEMFYKFKLKCDESESVLQKMKKDISEEIPELTSPVKCEQNDILPYEDIEEAHYESVSVIYQCFDCNIIFNTESELSTHNNDNHFCNICNKCFTGSKSLELHRKQNHKPEVKIKKKNKIKNEKKRDINIPSDLPPDFTEFLEKDINSIETTEGEHWQCKDCKDIFLSEFDLNLHETTHTTSDFVCAVCPKFFDTRQMLKRHIKIHMQKKPHVCKVCNKDFAESYALKKHMRRHTGEPRIKKHFCEECGKSFGEPYYLNVHMRKHTGERPLICELCGKRFADPRSLKVHSMSHAGIKPHMCNFCGKSFVQLVNLKKHILVHTGEKPFICSECGKSFTQSSTLDKHIRMHSGLRPYNCQLCEKTFSEKSSLVQHIRVHTGEKPYVCEQCSCCFASLSEIKLHNRKHTGVKKNICSICEKDFATPSGLCTHLRTHTGEKPYLCAQCSKMFSDKGSLKKHEKVHINTHSGERPYKCELCGKQYSRSGNLKEHMYVHAGIKRFKCHVCERPFAQYAHLFQHLKLHTGRTFKCEFCEKMFTTRSDRRKHVTRLHEEKQTFQCSQCEKCFSDRVYLGLHERTVHKGHAPHKCDMCDRSFGRKGTLDVHRRVHTGEKPYRCNLCGKQFTQHSPLSRHLKTQHANEVHDNQVPDYTFAAASKAKYKNNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -