Basic Information

Gene Symbol
Trerf1
Assembly
GCA_949319165.1
Location
OX439237.1:21805877-21851996[+]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 3.7e-12 3.1e-09 37.0 0.1 2 46 1240 1284 1239 1284 0.96

Sequence Information

Coding Sequence
ATGTCGTTACAGACCCGGTGTAGCCGTGTCGCGGCTCTCCAAAACCGTACGGCCTTGTTGGAGCCGTGGTACAGCCACGCAGTATGTGGGAGCGATGAGCTGAAAAAGTCGGTCGGCGTTGTAACTAGCGGCGACGCTGTCAAATTGACAGTGAAACGAGCCAGACCAAAAGTTGCCTCCCCAAACCGGCAGGGGCCGCAGCAGTGTCAGGTATGCTCTAAGGTGTTCGGAAACGCTTCGGCGTTGGCCAAACACAAGCTAACACACAGCGACGAGCGCAAGTACGTGTGCTCGATGTGCGGGAAAGCGTTCAAGCGGCAGGACCATCTCAACGGCCACATGCTCACCCACCGGAACAAGAAACCTTACGAGTGCAAGGCGGCCGGATGCGGCAAATCGTACTGCGATGCACGATCGTTACGTCGCCACACCGAAAACCACCACAGCGGCATCAGCAGTTCCAGCTCATCGAGTAGCGGTCCAGGTAGCGCGAGTGGGGGAGGAGGTGTAACTACACTGACCCCAGGCGCGGCGTCCGCAGCCGCTGCTGGTGGAGGTGCCGGCGCTGCCGTTCTGGCTAGTGGAGGTGGTGCACCTCTGGTCACGACGTCCACTTTATCTCCAGCGCAAGgTGCTGCTTCGGGAGACGCAGCTTCTCCACATGGTGCTGCATCTTCAACGTGTATTCAGTACGCTCCAGCTCCGACAGGTAGTGGAAGTGCTCCGGCTTCTCCGGCGCAGGGCCCCAGGTCGTACGAAACACCGAGCACCACGACATCCCGATCAACAGTCGCTGGAAAGAGTCAACTTCAACAATTACTAGCAAGTGAACCCGCCAAAAGCTCTAACAACACGCCAAATAACGACGGATTAACGAAACAGCAACTTGAATTGATCCATCAGATCATGGAGCAGACCCAGAGACAGTCGCAGCAGATCACGGCGGCTACGAACAAAGCCAACGCTGCGCTGAATGGTGGCGGTAGCAGTAGGACACAGCCAGTCGCCACAACGAACAAACCGAAACTATCACGAACGTGGAGTGCACCGGCGCCTACGACAGCAAATGCAACAGTAAAATCAACGACTTCATTATCATCTGGTGGTAACAACGCAGGTCAGCAAAGCTCCACGTCGAAGCACCCGCACCAGAATGTGGCGACGACGGTGGCGACGCCTGCACCAAAACCTGTTGAATGCAACCTATGTCACCGGAAGTTCAAGAACATTCCGGCGCTCAACGGTCACATGCGACTGCATGGCgggtattttaaaaagGACGCCGATAACAAAAAATGCGAGAAGAAAGAATCATCCGGACCTCCTCTTCAGACAGCCAGCGTGAGCGTCCGCGCACTCATAGAAGAGAAGATCATCAGCAAACGAACGACGACGACAACGACGTCCACCACGACGTCGCATCCGCAGACATCAAATGGTGGCGGCGAGAGGCAGCAGGTGGTAGCACCCCCGTTACATCCGCTGGAAAGGACGTCACCGAAAGTGACCTCCTTCGTCGTACCTGCGCCTCCAAATCACGTCGTGGTCACGACGGCTTCCGATAAACAATCATGGTTACTGAATGACAAATCAAGACGTAACAGTGATGCTGATAAATTCACGATGCCTCGAAACCCAATAAATACGACAACGGTGACCCAACAAGAAGCTGACGTTCTTGCTGATTTGATTTTAAAACGCACTAATACTAAAATCGTGAAACGTACAGCATCTGATCCCGGCGTTACTTCGCAACAACAGCAACTGCAGATACAGTTCCAGGAGGCGAGTGATAGCTTTGCATTGGCTTACGACGGGGCTAATTATTTCTCTGATGATCAAGACACCATGTTACTTCAGAATATAGACGCCGCGCAACTTGCTGCTTCCTTGTTACCTCAAGATCAGCAGTTGCAAGATATTGCGTCTTTAGAGGAGTACGCTAGTAGTCTACAAGAATCAGTTGATAGTCCATCGTTTAGTCATACGGTAAATCATGAACTTCAAGCAGTTTTAGATTCACCTTTGCCTGAAAGTTTAGCTGAATTCAGTACATACCATCCTTCCGATTCAAAAGATGTACTCGAATCTTTTTCACAACGGCAGCAGAGGTATACAGATTCCCCGACAATCGGTAGAAACTCATCACCTTTAATGAGGCATGATTCTCCCGGTTGTTTTGCCTATCCAACACCTCCTGCCAGCCATGAAGGTCCTTCATCAGGATACGGAACTTCACACCTGTTGCCTTTAATAACCGACACGAGTTCTGGAGCTCGAGACATTGATGAACCTCCACAAGCTTCTAGCCCGTTGTCTGCTGCATTTTACACGTCGACAATGTCGAGTGCGGCCGCCGTAGAAGAAGCGCTCGAGGAGGTCTTACCTGGAGAATCGATAGCTCCAGATGACATGTACCCTAGTCTAACTAATTCACCTCCACCAGGACCTCAGAGTCCTTTATCTGTTTCATCTCCAGGACCTCCGATATCACCGCATTATACCTTACAGTCGCAAATGATGCCTAATTCTGAAGATCCGTTGTTGTCTAGCAGTCCCAAAGAATTTGCAACAAGGAAGAAGTTTGAATTTCAATCGTTTAAGATTGTTTCGGGTTCAGGATTAGTAGAATTAGCATCGCCGACGACTTTAATTGTAGATAGCAATggagaattaaaatttattcagaCTGGTGGAACTAAAAATATTGTTGTAACTTCAACCGGTGTACTAAATGGTCATCAAACTTTACAAGTTGTCGATACTTCTGTAAACTCAACATCAAATTCAGTGACAAATTTAAGAACAGATAATAGTGGAAGTATGTCAAGTTTAACGGCTGCGTTAGGTACAGGGTTGGAGAGTATGAGAACAGTCGGGATCGGGACAAGCTTAGGAATAAAAAGTCAAGTGCATCCTCCTCAACATCGTGCATTACAAAGGATAGCAGGGGGAACGAATATTATTGGAAGAGGAACAACTAGAAACGTCACTCAACCTATACAGAGATCTAGACTGCATATAGCTGTAGATAATCTTAAGAGTGAAGAATCCGATGATGTTTTTCTCAGTCCAACAATgaTACCCGCAAGCCCTATTCGAGTTTCCCGGAAACGTCCTCGTTCTGAACCCCCTCTTGCCGTTCCTGTTGTGCACCAGTCACGACTGCGAGCCGCTAGAGGTCGCCCCCCAGGTGCAGCACCCTACACGCCCGCTCCGATGTTGAACCCATCGCGAACAGGGCCAGGACTGTACGCACACGCCAAATGGAAAGCGACGTCTGTCTCGCAAAACCATTTGCATGGACACGGACACGTTCACGGACACCACCATATCCATGGGCGCCGAAGTCCCGATAGTACTCCTGAGAGTGATTCCACTCCACATATAAATGTCGGACCTCAGTACCAGTGTTCTGTACCCTCCGTTCCTTGTGGCATGACACCTTTAGAAACAGATCAGGACAGGGAGCCTACATATGAACATTTATTGTGGGATCCCGGAATCGGCGGTGTCTGTACAGATACTGAAAttgAAATGTATCTGGAATTTGCATGCTGTGCTGCTGTTCCTGGTGGAGGTCGTAACAAGGAATACGCACttcatttattacatttatgtgCAGGCAATATACACGAGGCAATGTTACGATTAATGCAACCAACACCTTCGTTACCGCCTGATCATCCAATGCTAGCATATCAGTACTGCGAGTCAGATCGCTGGGGACCTCAAGAATCTGAGGCGTTTCACAGAGCTGTGCTGAAGCATGGTAAAGACTTCTATAACGTTGCCAAAGAAattgGTACAAAAACTGTAAAACAATGTGTGCAATTTTACTACGTCTGGAAAAAAGTTTGTTCTGAAGAGTACAGGCGGATACGTGGCAGTAGAGGGGCGAGAGACACTCCACCGTTCGCGGATATCATGGAAGCGGATATGAAACTCCTCGGAGTGTTAGATACGGAGCCACTTCTAACCCCCACTCCTCCTGAACTACCTAGAACATTTACTTGCGAATATGCAGATTGTTCAGCAAGTTTCAACTCGCGTGCAGCCTTAAATGGACATATCCGGATCCACGGAGGTACAGTTCGCCGCTCACCTACCCCTAGCAACATGCCGGGCAACAGTAGTACCCAGATATCTCATCACCATCACCACCTACAGCCGCAAACACAGGACGAGGAATTCCCGTGTAAAGTCTGTGGGAAagtattttcaaaaataaaaagccGGAGTGCCCACATGAAATCTCACAGGCCACCAGATGCAGAGCCACGACGAGTGTCAAAATCGTCAATGGTATCTGATGCACCATCACCTGGACATGGTTACGATACATCATCACCAATACCTTCACTCAATACAGCACCCTCGCCACATCACGGTCATTAA
Protein Sequence
MSLQTRCSRVAALQNRTALLEPWYSHAVCGSDELKKSVGVVTSGDAVKLTVKRARPKVASPNRQGPQQCQVCSKVFGNASALAKHKLTHSDERKYVCSMCGKAFKRQDHLNGHMLTHRNKKPYECKAAGCGKSYCDARSLRRHTENHHSGISSSSSSSSGPGSASGGGGVTTLTPGAASAAAAGGGAGAAVLASGGGAPLVTTSTLSPAQGAASGDAASPHGAASSTCIQYAPAPTGSGSAPASPAQGPRSYETPSTTTSRSTVAGKSQLQQLLASEPAKSSNNTPNNDGLTKQQLELIHQIMEQTQRQSQQITAATNKANAALNGGGSSRTQPVATTNKPKLSRTWSAPAPTTANATVKSTTSLSSGGNNAGQQSSTSKHPHQNVATTVATPAPKPVECNLCHRKFKNIPALNGHMRLHGGYFKKDADNKKCEKKESSGPPLQTASVSVRALIEEKIISKRTTTTTTSTTTSHPQTSNGGGERQQVVAPPLHPLERTSPKVTSFVVPAPPNHVVVTTASDKQSWLLNDKSRRNSDADKFTMPRNPINTTTVTQQEADVLADLILKRTNTKIVKRTASDPGVTSQQQQLQIQFQEASDSFALAYDGANYFSDDQDTMLLQNIDAAQLAASLLPQDQQLQDIASLEEYASSLQESVDSPSFSHTVNHELQAVLDSPLPESLAEFSTYHPSDSKDVLESFSQRQQRYTDSPTIGRNSSPLMRHDSPGCFAYPTPPASHEGPSSGYGTSHLLPLITDTSSGARDIDEPPQASSPLSAAFYTSTMSSAAAVEEALEEVLPGESIAPDDMYPSLTNSPPPGPQSPLSVSSPGPPISPHYTLQSQMMPNSEDPLLSSSPKEFATRKKFEFQSFKIVSGSGLVELASPTTLIVDSNGELKFIQTGGTKNIVVTSTGVLNGHQTLQVVDTSVNSTSNSVTNLRTDNSGSMSSLTAALGTGLESMRTVGIGTSLGIKSQVHPPQHRALQRIAGGTNIIGRGTTRNVTQPIQRSRLHIAVDNLKSEESDDVFLSPTMIPASPIRVSRKRPRSEPPLAVPVVHQSRLRAARGRPPGAAPYTPAPMLNPSRTGPGLYAHAKWKATSVSQNHLHGHGHVHGHHHIHGRRSPDSTPESDSTPHINVGPQYQCSVPSVPCGMTPLETDQDREPTYEHLLWDPGIGGVCTDTEIEMYLEFACCAAVPGGGRNKEYALHLLHLCAGNIHEAMLRLMQPTPSLPPDHPMLAYQYCESDRWGPQESEAFHRAVLKHGKDFYNVAKEIGTKTVKQCVQFYYVWKKVCSEEYRRIRGSRGARDTPPFADIMEADMKLLGVLDTEPLLTPTPPELPRTFTCEYADCSASFNSRAALNGHIRIHGGTVRRSPTPSNMPGNSSTQISHHHHHLQPQTQDEEFPCKVCGKVFSKIKSRSAHMKSHRPPDAEPRRVSKSSMVSDAPSPGHGYDTSSPIPSLNTAPSPHHGH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01343438;
80% Identity
iTF_01344406;