Slut016437.1
Basic Information
- Insect
- Sialis lutaria
- Gene Symbol
- -
- Assembly
- GCA_949319165.1
- Location
- OX439243.1:9197126-9197954[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.4e-09 1.1e-06 28.5 0.0 1 38 16 53 16 59 0.92 2 2 0.72 3.2e+02 1.4 0.0 30 38 215 223 213 226 0.85
Sequence Information
- Coding Sequence
- ATGCCGCGAATATATGTAAGAAAAGGGACACGAACGGGAGAGGTAGATGAAGATGCCATGAATTCTGCGATGAAAGAAGTCATGGATAAAAGTTTATCTATTAGGAAATCCGCACAAAAGTATGGCGTCAAACCAACGACACTTGAAAGTCACTTTAAAAAGTTTCATAAGCAAGCAGCTGCCGAAAAAGAAGATAATATACCGGAACGTGTTTTTAGTTCCAAGTTCACGTCAAACCAAGTGTTTACTATCGAAGAAGAgactattttaaataagtacataacGGACTGCTCCAAAATGCACTGCGGGTTGACAATTGTTCAAGTAAGGAAACTGGCATACGAGTTTGCAAAAGCAAATAAACTACATTACCCTCCTAGTTGGGATCATAACAAAATGGCAGGAAAGGAATGGCTGGACAGTTTCCGCAGGCGTAACGCAAATTTAAGTCTTATGAAACCTGAAAACACCAGTGCAGCAAGATCTTTTGCGTTTAACAAGACTGCTccgaaaaaaacaaaaacaaataggCCAACTTGTTTCGGCAGAGAGAGAGAGGAACTTGTTACATTCGGTGGAATCATATCAGCTAGTGGTAACACAATTCCGCCATATATACCATCTTTCCCAGGGTTCATTTTAAGGACCACTTTATGGATGGTGCTCCAGAAGGCAGCCTGGGATTTGCTACAAAAACTGGCTGGATAA
- Protein Sequence
- MPRIYVRKGTRTGEVDEDAMNSAMKEVMDKSLSIRKSAQKYGVKPTTLESHFKKFHKQAAAEKEDNIPERVFSSKFTSNQVFTIEEETILNKYITDCSKMHCGLTIVQVRKLAYEFAKANKLHYPPSWDHNKMAGKEWLDSFRRRNANLSLMKPENTSAARSFAFNKTAPKKTKTNRPTCFGREREELVTFGGIISASGNTIPPYIPSFPGFILRTTLWMVLQKAAWDLLQKLAG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -