Basic Information

Gene Symbol
jarid2b
Assembly
GCA_949319165.1
Location
OX439242.1:6127750-6133301[+]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 6.3e-20 1.5e-16 60.8 0.0 6 89 1265 1346 1261 1346 0.93

Sequence Information

Coding Sequence
ATGCCTGttagtaaatatgataaaaaacgGAAAAGACGGGAAGATGATATCGTCGTGGATTGTTTTTCAGAAAGTCCTAAAAGAACAAAGGTACATGCCCAAAGAAAATTTGCACAAGGAGctgtattattaaatacaaatattacacCAATAAAAGAACCTGAGAAAGAAAAACCTAAACCTCCCGAAACAGCTGTAGAATTATTACCTTTGAAACGCCCAAATACAGAagattttcttacatttttatgTTTCCGTGGCACTTCAATTTTACCTTcacatttagatttttttaacactGCCCTACCAACAGAATCAATTGACGAAACATCAAAAGATGAAACATCGGAAAAATCAGAACTTGTTAAAGATAAACCTCTTTCTAGTCATTTACCGGATAGACCATTTGTTGCTTTCGGAGTTAGAAAGCACGCAGATCCGTTTGTAAACAGTAAATTAGAACGCAAAAGAAGGCATGCATTAACTGTACAAAGTTTGAGAAAAAGATATCAAGATAAACGATTAGCTAAAATCCGTGCTATTGCTGAAAGCAAAGTGGGCGCTACTGCttcatttacaaacaaaaatttcatcaaaacaaGATCATCATTACGAAATACAACTACAACAAGCACAAATGctaataaaattcctctaaattcaaacaaaagaaaatatattgtacTTAGAAAAATGTGTTTACGAAGTAGATCTCGAATTGTTCGTACCGAAGTTATCACTCCAGTTAAAAGAGGGGTGAAAAATGTAACTCTGAAAAATGAAGATGTTagtaaaaagaaaaagaaattaGAAATATCATCCGATTTTTCATCAGATGATGAGAAACCATTATTGAAAACTGTTACGAAAGTAAAACCTATAAATAAAAGTTCACCATTGAAAATAGCTAGAAAAACAGCTTCAATAGTTCCTAAATCAAATGTATTTAGAAAAACACCGTTAGTTAagaataaagtaaataaacgATTTACAAGATCCAACCCTGAACCAGAAACCGCAATTTCGCAACGGCCAACCAGAAAAACAAAAGAAGCAGCCACATTGTACATGGAACTTCTTGGGCAGAAACTTGTGTTAGATCAAGAAGTTGACGATGATACTTTATCAATTGATAGTTTCCCCGAGTTACCAAATGTAAAAAGAGCAGAACAAAGAGAAAATGAAATAAGAGCCCAATCTAAAAATAGAATGATAACAAGAAACAATCCagaaaaagataaaattaataaatctaactgtagtaaattaaagaatatgaataaaaaactaAATCAGAGTAAAATCTcacaaactaaaaataaaattacatcaaaAGTTATCGAAAAGAATCCAAcagatacattaaaaaataaatgttctactagaaatacaaagaaaaatgttattgaaaatacaaaaaatattgctagGAAAAAGCCACTAGAAGTTCAAAATAATACTCAGATCGTGAAGAAACATTCACTTGaagtattaaaaaagaaaagtaTAATTCAAACATCAAAGAATAATTCTACtaaattagtaaataaacaattacttGAAACATCAAAGAGAAAAAGGCAGGAAATGTTAAAGAAAAGAAATGAAAAACCTCAGGttaaaaaagatattaaaaagaGTGAATCAGTATCCGATAACAACATAAAAGATCTCCGTAGCAGAAACGTCAAATTTGAAGAAAAGatcaaaatacaaaaagaaattACACCTGTAAAAGTGAATGATACTAAACAAAACAATGAAATCATAGACGTTAAATCTACAAAAAACATAACTGatagtaaaaatgtttcaaaatctacaaaagtattaaaaaatgaaaacgaGTTAACTGTACATCAAGAAAAAAATGAACATAAAATCATACCTGTCGATACaagtgcaaaaataaaaaaaagtacaaaatcaaCCAGTGTAGAAAATTCAACTGAGGAATCTAAAGAAATAAAGAATACTGAATCAAATTTAGACCAGAGTTTTAGTGATTCTGATGAGGAGCCATTagcaacaaaattaaaacctgAAAAAGATACTGAGGAAGCTAAAAATATTGTGCAATGCGATAAGAACAAAAAACCgactaataaaattaaatctttgaaaaatatagatattaagTCAAAATCATCTGTTAATGTTTCTTCAGAAAATATTAACGTATCATCAGAAGAAAAACAGAATAAAATCGAACGAAACAGATCTGTAAATACTACGTCAGCAGATCCAAACTTTTTGCTTTCTGATGACGATGAAGAAAAGTACTTCCATGGTTTTGTAAAAACGGAAACTTGTGCTAATGTAAATGATACATCATTTCAGTTTAAAGAAGAGAGTCTATCAGATTCAATGTGTAAAGATATAAAAGATATAGAACGTAGATATGGAAAAGGAAAAGTAAATATGTCTGCTGAACAAATTGAAAAATGGTTAAATGACGCTGATAAAGAAATGAAAAAAGAATCGTTAGAAAAACTGATTCAGAAAGAGGAATTGTTAAAAACACAGCAAAAAATACAAGATGCGATTGCAATTTTAGATAAATCAGTCACTGAGAATGTAACTGAAACAAATGAGTtattaaaatcagaaaaatcaATCGATTCTTCTAAACATGCTAATATTTCTGATCGGAAAACTGTTTTTCAACAACGTAGACCAATTATTAATAagtcaaaagaaaaaaatgtaaaaacaccTAACAAAAATGCTTTTTCGCCTGATAACGAGAGCAGTGTTTACGCATTCGAAGCAGAAACAGATGCTCCACCTGTGAACACTCCATTTCGTCACCATTGTCGACGTTCTTCTAGTACAGTGACTTCTAAGTCAGAAGATGAATCTGCTAAAACTGAAGAAGAACTTAAAAAATCTCCTTCGAAATTCCGTTTCCCTACTTTACTCAAACAAGATGTTATCAAATCTGACAACAAACAAGTACAGTTAACATTATCTGCGGATGATAATAACTGTGCGTCTATAGCAGTGCAAGTCAACTTGGATGGAAGTACATCCAAACAAGTAGCCATGAATTCAAATATAGATTACCCGAATCAGACAGATGCTGCAGATGATGGTGAACTGTTTTATATTCCTTTACAGAATGGTCCAGAAGGATCTTCAAACCAACAAATTGGTGTTTCAGTTAAATTAGATACGACTGGTGCTAATGTCATTATGCAAGCAAAACTTGTTACGAAGCCAACAGGAAATCAAAACATATTCCCAATGAGCAGAATGTTATTACCTCAATCCAAACCATCGACATCCATGTACCCTCCCATTGGGACAGTACAACCGTTCCGAACAAAACCTTCAGAAACTGTGAAACCATTACCGAAACCAGCAACTAAAACAACTGCCGATCACGCACAGTTTTGCGATGATACAAAAACTGATAAATCAAAACCAGTTCCGACATCACCCAGTACGTCATCTTCTTCAAGTGCTCGTTTAAATAAACGTTTAGTTAAAGTAAAACCACGTCAGCCAGATTCACCAATGTTAACTGCTACAGTATCTGCTTTTCCAAAACAAACAGATCCTGCACAAATCGTTAATGCACCTTCATTTTATCCTACTGAAAAAGAATTCCAAGATCCGTTGgaatatattgataaaatacgTCCTTTAGCTGAAAGTTTTGGTTTATGTAGAATTGTACCTCCTACTTCATTCAAACCAGAATGTAAAATCAGTGATGATATGCGATTTACAGCGTACAATCAGTATGTTCATAAGATGCTTAATCGATGGGGTCCAAATGTGAGAGAACTGACAgctattagaaaatatttagcAACACAGAACATTGCTCTTTCACAAGCACCATGgattgGTTGTATGGAAGTTGATTTACCTCGTTTATATCAAACAGTGCAACTATTAGGAGGTTTAAAAGAAGTTATTGAGAAGAAGCGATGGCCACGTGTAGCCGAATTAATGAGAATTCCAAAATCAGCCCAAGATCGTCTGACAAAACTAGatgatatttattgtaaatatttattaccgTACGACACCTTATCTCCTGGTGAacgagaaaaattattaaaagaagCTGATACAGATTGGGAAAAACACTGCAACAACATGTCAAGTCAAGCATCTAGCGATGAAGCAAATGATTCTGATGATCTTGACGCAAACGAATGCATAGTAAGGGGCAGGAGCATAGCTTTAAACTCGTTTTATAGAATTGCAAGAAACACAATGGCTATGTGGTTCAAATCTCTAGAACCTTCAGCTACAGACGTCGAACAAGAGTTTTGGAAACATGTCAATGACAGAACTCATCATCTGTGTGTTAATTCAGGGTCGATTGACTCGAGCAGTTATGGATACGGATTTGCTTGTTCAAAGAATAGTCCATTTGCACGTCACCCATGGAATCTGAAAGTGTTGACCAATAACAGCGGATCGATTTTACGGTCTATGGGACCGATAATGGGTGTGACTGTACCTACAATACATGTTGGTATGCTGTTTAGCGCTTGCTGTTGGTACAGAGATCCACATTGCTTACCTTGGATAGAGTACTTGCACACTGGAGGTAGTAAAGTATGGTACGGAATCCCAGACTCCATGCACTCTGCGTTTCGTCAAactctaaataaaattattcctaATTTATGTCGTAAAACTTCAGTTTGGTTACCGTCTGATACAGCTATGATTCCGCCGAGTCTTTTAGTAGAAAACAATGTATCTCTTTGCCGTATCGTGCAAGAGCCCGGCcagtttattgtaatttttccaaAAGCATTTACATCGAGCCTGTGCACCGGGTATACTGTATCAGAAAGTGTGTTTTTTGCCCAATCTTCATGGCTTGATGAAGGGGAAAAAATATTTACCGAACTTAAAGAAAGCTGTGAACCGTCGAtgttttcattagaaaaattgTTCTTGAGTATCGCTGTAGATTCTCGATGTAGTCTTGATGTTTGTAGAAAAATATTTGCCGGTGTAGAAAATATCATTGTCAGAGAATGCGCGGGACGAGAGAAATTAAAGAATTTAGGTTTGATTGAGTTGGAGCGCTTACCGCAGTCTaataagaaaaagaaaaaagcGGACACGGAGGGTGAATACCTTTGTGAAGTTTGTAGAAGTAACTTGTACGTGTCACTTGTTTCTGAGTCGCAAGATGACGGTATATATTGTTTACAGCATGCAGCTGAATATTTAGAAAGTAAGAAAATTGAAATGACAAATTGTAAATTAATGTATTCTTATAGCGAAGAAGAACTAAATGATATtgttaataaactaaaaaatcatattGATACCAAAAGTCaaaagaaaaattcaaaataa
Protein Sequence
MPVSKYDKKRKRREDDIVVDCFSESPKRTKVHAQRKFAQGAVLLNTNITPIKEPEKEKPKPPETAVELLPLKRPNTEDFLTFLCFRGTSILPSHLDFFNTALPTESIDETSKDETSEKSELVKDKPLSSHLPDRPFVAFGVRKHADPFVNSKLERKRRHALTVQSLRKRYQDKRLAKIRAIAESKVGATASFTNKNFIKTRSSLRNTTTTSTNANKIPLNSNKRKYIVLRKMCLRSRSRIVRTEVITPVKRGVKNVTLKNEDVSKKKKKLEISSDFSSDDEKPLLKTVTKVKPINKSSPLKIARKTASIVPKSNVFRKTPLVKNKVNKRFTRSNPEPETAISQRPTRKTKEAATLYMELLGQKLVLDQEVDDDTLSIDSFPELPNVKRAEQRENEIRAQSKNRMITRNNPEKDKINKSNCSKLKNMNKKLNQSKISQTKNKITSKVIEKNPTDTLKNKCSTRNTKKNVIENTKNIARKKPLEVQNNTQIVKKHSLEVLKKKSIIQTSKNNSTKLVNKQLLETSKRKRQEMLKKRNEKPQVKKDIKKSESVSDNNIKDLRSRNVKFEEKIKIQKEITPVKVNDTKQNNEIIDVKSTKNITDSKNVSKSTKVLKNENELTVHQEKNEHKIIPVDTSAKIKKSTKSTSVENSTEESKEIKNTESNLDQSFSDSDEEPLATKLKPEKDTEEAKNIVQCDKNKKPTNKIKSLKNIDIKSKSSVNVSSENINVSSEEKQNKIERNRSVNTTSADPNFLLSDDDEEKYFHGFVKTETCANVNDTSFQFKEESLSDSMCKDIKDIERRYGKGKVNMSAEQIEKWLNDADKEMKKESLEKLIQKEELLKTQQKIQDAIAILDKSVTENVTETNELLKSEKSIDSSKHANISDRKTVFQQRRPIINKSKEKNVKTPNKNAFSPDNESSVYAFEAETDAPPVNTPFRHHCRRSSSTVTSKSEDESAKTEEELKKSPSKFRFPTLLKQDVIKSDNKQVQLTLSADDNNCASIAVQVNLDGSTSKQVAMNSNIDYPNQTDAADDGELFYIPLQNGPEGSSNQQIGVSVKLDTTGANVIMQAKLVTKPTGNQNIFPMSRMLLPQSKPSTSMYPPIGTVQPFRTKPSETVKPLPKPATKTTADHAQFCDDTKTDKSKPVPTSPSTSSSSSARLNKRLVKVKPRQPDSPMLTATVSAFPKQTDPAQIVNAPSFYPTEKEFQDPLEYIDKIRPLAESFGLCRIVPPTSFKPECKISDDMRFTAYNQYVHKMLNRWGPNVRELTAIRKYLATQNIALSQAPWIGCMEVDLPRLYQTVQLLGGLKEVIEKKRWPRVAELMRIPKSAQDRLTKLDDIYCKYLLPYDTLSPGEREKLLKEADTDWEKHCNNMSSQASSDEANDSDDLDANECIVRGRSIALNSFYRIARNTMAMWFKSLEPSATDVEQEFWKHVNDRTHHLCVNSGSIDSSSYGYGFACSKNSPFARHPWNLKVLTNNSGSILRSMGPIMGVTVPTIHVGMLFSACCWYRDPHCLPWIEYLHTGGSKVWYGIPDSMHSAFRQTLNKIIPNLCRKTSVWLPSDTAMIPPSLLVENNVSLCRIVQEPGQFIVIFPKAFTSSLCTGYTVSESVFFAQSSWLDEGEKIFTELKESCEPSMFSLEKLFLSIAVDSRCSLDVCRKIFAGVENIIVRECAGREKLKNLGLIELERLPQSNKKKKKADTEGEYLCEVCRSNLYVSLVSESQDDGIYCLQHAAEYLESKKIEMTNCKLMYSYSEEELNDIVNKLKNHIDTKSQKKNSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01342785;
90% Identity
iTF_01342785;
80% Identity
-