Basic Information

Gene Symbol
stc
Assembly
GCA_961205875.1
Location
OY540816.1:3743473-3760595[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 2 2e+04 -4.4 1.6 15 19 547 551 546 551 0.81
2 16 0.45 4.4e+03 -2.0 0.3 4 10 580 586 580 588 0.91
3 16 1.7e-05 0.17 12.1 14.2 4 19 597 612 595 612 0.93
4 16 2.9e-08 0.00028 20.9 11.1 1 19 647 665 647 665 0.97
5 16 1.8 1.8e+04 -4.0 1.4 9 13 671 675 670 676 0.79
6 16 1 1e+04 -3.2 0.6 6 10 695 699 694 699 0.91
7 16 3.3e-08 0.00033 20.7 14.2 1 19 705 723 705 723 0.97
8 16 1e-05 0.099 12.8 11.4 4 19 770 785 763 785 0.86
9 16 1.6 1.6e+04 -3.8 2.0 5 10 814 819 814 819 0.93
10 16 0.0016 16 5.8 9.3 1 11 825 835 825 836 0.96
11 16 0.34 3.3e+03 -1.6 0.5 4 10 840 846 839 846 0.92
12 16 9.8e-09 9.6e-05 22.4 16.3 1 18 852 869 852 870 0.97
13 16 1.3 1.3e+04 -3.5 7.9 9 19 916 927 906 927 0.83
14 16 2 2e+04 -4.3 0.5 6 10 953 957 952 959 0.60
15 16 2.7e-06 0.027 14.6 10.6 1 16 963 978 963 989 0.88
16 16 6.6e-05 0.65 10.2 15.1 1 19 995 1014 995 1014 0.97

Sequence Information

Coding Sequence
ATGGCTAATTGGAATCCATATTATGGGGCTCCCAATTACGGACCGCCAATGTATTCTTCATCAGAAACACCTCAAGAATACTATGAGTCTGATGCCATGAGATCTTATAACTATCCGATGCCATATCAGTACAACAtcgattattatcaaaataatgaaatgccaccaaattataattttagtaatgcgTACACTGTACAACAGGTTGAAACACAAATGAACTTCAATTCTAATGCAAACAATTTCGTTACAAATCCATTAAGTAATCCTCAATCACATCACATGTATTTTGAAAACAGGGCTGAAAAATTAATTGGTTCTAACCCTACTTTTAAACCTCCACATATAAATGAGATAAGTTATATCCAACATTCACCAAACGTGTTTAGAAACACTGGCAGTCAACAATCAGTTGATGTTAATAATTCAGAATTAACAAATtacaattttagtaattttaatccACAAGTaccaaaatttgaaaacaatacgATGCTCAGAAGCAATACTGAAAATATAGAATCTTCATTAACAGTAACAGCTACAGAATTTCATCCGAAtgcaaaaaatgatattgataaACAAGATCAAAATgagaaaagtaattttaaaaacaaaggaGCGATAAAAAAGAATGTGCTTGACGaacaaaatgttgaaaataaacACAAGAATAGAAAACAATATTACAACCAAAGCAAATCATACACTAATCGTAGATATGCTACATCAGATGGTAATAGTAAAggtttcaaaaatgaaaatgtgAAATTAGATGAAAGAAATTATAATTCTTATGATAATCATAGTAAAAGTAGTGAAAAATCTAATGAAAATGatgaaaaatcaaaatatagtTCATATAATAGATatggaaaaaataatcaatatagCTCACGTAATTTTTCTAATTCTCGATAtggaaataaatatgataaaaaagattttaaaatagaagAAAAGAAATTAGAAGACGTACAGAGTACATCAAAACAGCATATTTCCACTGAAGTTacacaaacaaaagaaaaaaataatgataaaaacataACTGAGAATCGTAATTTAGAATCAAATTATGACGCGAATCGTCGATTTGGTAGTTATAGAAGTAATAAGTATGGAGATAATAATTCTTATTCTAAAAATTCTTATGGAAaaggtaaaaatgaaaaaaaatataatgatagTTATACTAGTACACGAGTTAATAGGAATGGAGATGAAAGCAAGAATAAGTTTGTGAATTCCGAAAAGGAAAGCAGAAGAGTAAATGAGAATTGGCGcaACCGACAACCAAATGAAAACAGTAACTCAAGTAATCAACAATATCGTAATAGCTTTAACTATAGAAATGATAAATCACattacaacaataaaaaatctaataaagaAGAACCTGAAATTGAAAAATCCAAATCAAAAAACATACCAACTGCAGACATGAAAAATgagaaattgTCTCAAAGAGAAAGACTTACGGCACAACTTATTAATGGAAAATTGGAATGTTTGGTTTGTTGTGAAAAAATACGTCAAAATGATTCTATTTGGTCTTGCAGTAACTGCTATCATATTTTGCATttgaattgtattaaaaaatgggCAACATCTTCACAAGCAGAAAAAGGATGGCGATGTCCTGCTTGTCAAAAGGTAAACATGGATGTACCAATGGATTATTATTGTTACTGTGGTCGTACAAGAGATCCTGCAACACGAGCTGGTGATTTGCCCCATTCGTGCGGCGATACTTGCGGTAGATTACCACGCAAAATGTCTTGTGACCATAAATGTATGCTACAGTGTCATCCAGGACCATGTCCTTCGTGTACAGTTATTGTTAATAGattttgtgGTTGCGGTTCTGTTCAGAAATCTGTTATTTGTAATCAAGAATTGTTCATGTGTGAGAGTGATTGTAACAAGAAATTAAATTGTGGGATTCATTCCTGCAaacaaaaatgtcatattgGAGATTGTGATGAATGTACAGAAAAAATAACTTTAGTTTGTCACTGTggaaaatcaaataaaactattaaCTGCGATGCTGAAAATTCTTCTAAAAAGGATTATGCTTGTGAAGCTGTTTGTGACAAATTACTTACTTGCGGTAAACATAAGTGTACTGAAATCTGCCATCCAGGAGAATGCGAAGATTGTCAACTTGTACCGGAACTTATAATAACATGCCCTTGTGGGAAAACAAAACTTACAACGGAAAGAAATTCATGTGCGGATCCAATACCTTGTTGTGATAAGatttgtggTAAGCGTTTACTTTGTGGCCGTCCTGTAGATCCACATCGATGCGACTCTGTATGTCACAAAGATGCCTGTCCACCTTGCCAACAGACAACTTTAGTTCGTTGCCGATGCGGTCACATGGATCGTGAACTACCTTGCACTAAATTAACGGGACGTCCAGATGATGCTAGATGCGAAAAGAAGTGCAATAAGatgAGATCTTGTGGACGTCATAAATGCAATCAAAAATGTTGTATAGAAGTTGATCATGAATGCCCACTTTTGTGTAACAGAATGTTATCGTGCGGTCAACATCGTTGTGAACAATCCTGCCATGTTGGACATTGCCAACCCTGTTATCGCTCAAGTTTCGAGGAATTGTATTGTGAATGTGGTACAAGTGTTTTATATCCACCGGTACCGTGTGGCACTCGTCGTCCATCTTGTTACCAACCATGTACTCGTAGGCATGCTTGTGATCATGAAGTATTACACAAATGTCATTCAGAAGCTCGGTGTCCACCATGTACTATCTTAACACATAAATGGTGTTATGGTAAACACGAACTACGCAAGACTATACCATGTCACCAGTCAGAATTTAGTTGCGGCAGACCTTGTGGTAAAGGTTTATCTTGCGGAAGACATAAATGTATAACACCGTGCCATTCTGGAGTGTGTTTAGCAGAAGGAAATAATTGTATACAACCGTGCACTACACCACGTATGGCCTGTGGACATCCATGTGCAGCTCAGTGCCACGAAGGGTCTTGTCCAGATACCCCTTGCAAAGAAATGgtAAAAGTAACGTGTGAATGCGGACATCGTTCTTCATCAAGAGCATGCGTAGATAACATTAAAGAATACCAACGAATTGCTACAGCAATGCTAGCTTCGAAAATGAATGATATGCAATTAGGTCATTCTGTAGATATTGGTGACATTGTTACGGGTGCTGGTGTTCGTAAACCTAATACTCTGAAGACattAGAGTGTAATGATGAGTGTCGTATAATTGAACGTAACAGAAGGTTAGCTATTGGTTTGCAAATAAGAAACCCTGATTTATCAGCTAAACTTACGCCTAAATATTCCGACTTCATGCGACAATGGGGCAAGAAAGATCCTCGGTTTTGTCAAATAGTACATGATAAGTTAGCAGAGTTAGTACAGCTTGCGAAACAGtcAAAACAGAAGAGTCGAAGTTATTCATTTGAATCTATGAATCGAGATAAAAGACATTTTATTCATGAATATTGTGAACATTTTGGCTGCGAATCAGCAGCCTATGACCAAGAACCTAATAGAAATGTTGTTGCTACTGCTGTTaaagataaagcTTGGTTACCAAGTTATAGTCTTTTAGAAGTTTTGAATAGAGAAGCTGGTCAACGTAAAGTTCCTGGTCCTGTGTTACGTTCTTCAGCAAATGTAATCACGAAATCCACAAGTGTTTCTCTCCCGTTGAATTCTCGTAAGGAACAAGTGCCGGTAGTGAAACCTCCAACGCCGGAAGGTGAATATATAGATTATTTCGATGACTAA
Protein Sequence
MANWNPYYGAPNYGPPMYSSSETPQEYYESDAMRSYNYPMPYQYNIDYYQNNEMPPNYNFSNAYTVQQVETQMNFNSNANNFVTNPLSNPQSHHMYFENRAEKLIGSNPTFKPPHINEISYIQHSPNVFRNTGSQQSVDVNNSELTNYNFSNFNPQVPKFENNTMLRSNTENIESSLTVTATEFHPNAKNDIDKQDQNEKSNFKNKGAIKKNVLDEQNVENKHKNRKQYYNQSKSYTNRRYATSDGNSKGFKNENVKLDERNYNSYDNHSKSSEKSNENDEKSKYSSYNRYGKNNQYSSRNFSNSRYGNKYDKKDFKIEEKKLEDVQSTSKQHISTEVTQTKEKNNDKNITENRNLESNYDANRRFGSYRSNKYGDNNSYSKNSYGKGKNEKKYNDSYTSTRVNRNGDESKNKFVNSEKESRRVNENWRNRQPNENSNSSNQQYRNSFNYRNDKSHYNNKKSNKEEPEIEKSKSKNIPTADMKNEKLSQRERLTAQLINGKLECLVCCEKIRQNDSIWSCSNCYHILHLNCIKKWATSSQAEKGWRCPACQKVNMDVPMDYYCYCGRTRDPATRAGDLPHSCGDTCGRLPRKMSCDHKCMLQCHPGPCPSCTVIVNRFCGCGSVQKSVICNQELFMCESDCNKKLNCGIHSCKQKCHIGDCDECTEKITLVCHCGKSNKTINCDAENSSKKDYACEAVCDKLLTCGKHKCTEICHPGECEDCQLVPELIITCPCGKTKLTTERNSCADPIPCCDKICGKRLLCGRPVDPHRCDSVCHKDACPPCQQTTLVRCRCGHMDRELPCTKLTGRPDDARCEKKCNKMRSCGRHKCNQKCCIEVDHECPLLCNRMLSCGQHRCEQSCHVGHCQPCYRSSFEELYCECGTSVLYPPVPCGTRRPSCYQPCTRRHACDHEVLHKCHSEARCPPCTILTHKWCYGKHELRKTIPCHQSEFSCGRPCGKGLSCGRHKCITPCHSGVCLAEGNNCIQPCTTPRMACGHPCAAQCHEGSCPDTPCKEMVKVTCECGHRSSSRACVDNIKEYQRIATAMLASKMNDMQLGHSVDIGDIVTGAGVRKPNTLKTLECNDECRIIERNRRLAIGLQIRNPDLSAKLTPKYSDFMRQWGKKDPRFCQIVHDKLAELVQLAKQSKQKSRSYSFESMNRDKRHFIHEYCEHFGCESAAYDQEPNRNVVATAVKDKAWLPSYSLLEVLNREAGQRKVPGPVLRSSANVITKSTSVSLPLNSRKEQVPVVKPPTPEGEYIDYFDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01344590;
90% Identity
iTF_01344590;
80% Identity
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