Basic Information

Gene Symbol
nfxl1
Assembly
GCA_961205875.1
Location
OY540819.1:8568178-8571799[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 2 2e+04 -7.9 5.6 15 19 160 164 159 164 0.81
2 20 1.3 1.2e+04 -3.5 0.9 4 10 195 201 195 201 0.84
3 20 3.1e-08 0.00031 20.8 16.4 1 19 209 226 209 226 0.99
4 20 1.4 1.4e+04 -3.6 0.4 6 10 251 255 250 255 0.87
5 20 1.4e-07 0.0014 18.7 13.3 1 19 261 279 261 279 0.97
6 20 1.3 1.3e+04 -3.5 0.7 5 10 303 308 303 308 0.85
7 20 1.3e-05 0.13 12.5 15.8 1 19 314 332 314 332 0.99
8 20 0.00047 4.6 7.5 11.3 1 18 367 384 367 385 0.97
9 20 0.66 6.5e+03 -2.6 0.4 1 5 394 398 394 403 0.73
10 20 3e-05 0.3 11.3 16.6 1 18 419 436 419 437 0.97
11 20 8.2e-09 8.1e-05 22.7 15.6 1 19 446 464 446 464 0.99
12 20 0.95 9.4e+03 -3.1 0.6 5 10 492 497 492 497 0.92
13 20 0.00027 2.7 8.2 5.8 10 19 513 522 510 522 0.91
14 20 0.13 1.3e+03 -0.3 7.5 3 11 533 541 532 542 0.90
15 20 2 2e+04 -4.1 8.5 14 19 570 575 570 575 0.94
16 20 1.1 1.1e+04 -3.3 0.4 9 12 592 595 591 595 0.79
17 20 0.00015 1.5 9.1 5.9 1 11 611 621 611 625 0.95
18 20 1.8 1.8e+04 -4.0 2.5 15 18 636 639 635 643 0.64
19 20 5.1e-07 0.0051 16.9 17.9 1 19 651 668 651 668 0.94
20 20 0.00016 1.5 9.0 13.0 1 16 711 725 711 732 0.90

Sequence Information

Coding Sequence
atGAGTAATCAAAGAAGACAAAATAATCCTTGGAACAGAGAAGATTCTAAAAATGTACCAAAGAAAACTAACACTTCTCCGCCCAAACCTACTGCTGAACAAAAATTTCGAGAAGCCCAGAAGAAACTTCAAGAATCAGTTCAAAAACATACTCAAAATTATGAATCTTCGTCAGATGAAGAAGATTTAGAATCAGAAAATGTAATTGgatcGGTTTTACAAAATTACTCTCAGCTAGGTGGAAAAGACTTAGGAAGAACACAACGTTATTTGGAAGAAGCATTTATATCTGGTGCAGCAACATGCTTAATTTGTATTGCTACAGTGAAACGGTCAGATCCTATATGGAGCTGTCTATCGTGTTACTGTTTCTTCCACCTCAACTGTATCCAACGGTGGGCAAAAGACAGTGTAATACACCAAAAAAGAGCTCTGGAAGATGTACCAAAccctaaaatattaaatctgtTCTGGTGCTGTCCTAAATGCAGACATGAATATGAGCCATCTGCATCACCAAATTCTTACATGTGTTTTTGTAACAAATTATTCAACCCACCATATCATCCTTGGCTTGTTCCTCATTCTTGCGGTGAAAACTGCGGCAAGAAACTACAACCAGAATGTGGTCATGAGTGTATATTACTTTGCCATCCAGGTCCTTGTCCACCTTGCCCTAAAACTGTTAACACCAAATGTTTCTGCAGCAAGAAGCAACGATCACAGCGATGCAGTAATCGTGAATGGTCATGCGCATCAGTATGTTCTAAAATGTTACCCTGCAGCAAGCATAAGTGCGCTCAGAATTGTCATTCAGGAGAATGTAATCCCTGTTCACAACGTAGTAAACAACCATGCGATTGTAGGGCACAGTCTCAAATGAGAGAATGTGCTAAACCAAGATGGAAATGTGGAAAGgtTTGCAACAAACAACTAAGTTGTGGTAACCACCATTGCACTGAAATATGCCACACGGACTCTTGTGGTGAATGTCCCAAATTGGGTGATCGAATCTGCCCTTGTGGTAAGTCAATATTCCAGCTGCCGTGCACTGAAGATACGCCGACTTGCGGAGACACCTGTGGAAAACCACTTGAGTGCGGATCTCATCACTGTCTGCAAAGGTGTCATTTTGATAAGTGCGGAAGCTGCTTGGAGGTGTTGATGAAAACTTGCCGTTGTGGTTTACATAGTAAGGAGCTGCCATGTCAGAAAGAATTCTTGTGTGAAACCAAGTGTAAACAAATAAGAGATTGTAGTAAACATCCATGTAATCGTAGAtgCTGCGATGGTTCATGTCCTCCATGTGAGAAACCATGTGGACGTACGTTACAATGCGGAACACACAAATGTCCTTCAGCTTGTCACCGAGGCCCTTGCTACCCGTGTCCAAGGACAGTTGACATCAAGTGTCATTGCGGAGGTACAGTAGTAACGGTTCCTTGTGGAAAACAACGAAAAACTCGGCCTCCGCGCTGTATTAAACTTTGTCGAAACTTACCTGACTGTCATCACACAAAACGTGAAGCCCACCGTTGTCACTTTGGCGAATGTCCTCCATGTAAACAGATATGCAACATACTACTTCTAAACTGTAACCACCATTGTGGTGCCCTTTGCCATGCGTCCGTGCTTGTCAAGTTGGATGAACACAAGCCGTCAATGCCGTGGGAGGCGAGAGGCCCGCTAGTGGAGAAGTGTGCATTGCCGTGTCCGCCTTGCCCAGTGCCTATACCGGTGACTTGTCATGGACAACACGAGACCATCAATGTGCCTTGCCATGAGGTTAGGGCCTTGTCTTGTGGACGGTCGTGTGGGCGCAAGCTGGATTGTGGGAATCATACGTGTGGTCTTGAGTGTCATGTGGTGAAAGGTGCGGAAGATGACGAGAAGgctGGTAGAAACTGTCAGGTCTGTGAATCAAAATGTACAAAACCACGGCCAGAAGGCTGTTCGCACAACTGCCCGAAGCCGTGTCATCCAGGGGACTGCCCTCCTTGCAGAACAGTGTTTCGAATACGTTGTTACTGTGGACTCAATCTGCCGTACATCAGTTGCGGCGACTGGACCGACCCTGACAAGCAGGACAAGCTCAAGAACTGTGGTAATCAGTGTCCTAAAAACTACGAATGTGGTCACCGCTGTCGCATGACTTGCCACGATGGCGAATGCCTCGGTGCCGAAGAGTGTCACAAAAAAGTAAAAGTGTTCTGCACTTGCAAACGGCTCAAGAGAGAATTCCACTGTGATGTTGTGCGATCTGGAAATGGAACAATCGATTGCGATGAAATCTGTGCTCAGAAACAAGAAGAAATCAGAAAAGCTGTAGAGTTTGAATTAGAACAGAAGAGGAAACTTGaagaagagaaaaataaaaaagacgTACTAGAATTTGAGAAGAAATTCCAGTCAAAAAAGAAGTACAGGGAACGTAGACAATATAATGAAGTAGAAGAacaaagtttatataaaaaatattggtttgtaATGCCGTTTATTGTAGCTATTAGTtttgaaattgaatataaaactTTTGATGTAAGAAAACAAGAGATAGCAATAAAAGTACAGCAGAGATTGTCATCATAA
Protein Sequence
MSNQRRQNNPWNREDSKNVPKKTNTSPPKPTAEQKFREAQKKLQESVQKHTQNYESSSDEEDLESENVIGSVLQNYSQLGGKDLGRTQRYLEEAFISGAATCLICIATVKRSDPIWSCLSCYCFFHLNCIQRWAKDSVIHQKRALEDVPNPKILNLFWCCPKCRHEYEPSASPNSYMCFCNKLFNPPYHPWLVPHSCGENCGKKLQPECGHECILLCHPGPCPPCPKTVNTKCFCSKKQRSQRCSNREWSCASVCSKMLPCSKHKCAQNCHSGECNPCSQRSKQPCDCRAQSQMRECAKPRWKCGKVCNKQLSCGNHHCTEICHTDSCGECPKLGDRICPCGKSIFQLPCTEDTPTCGDTCGKPLECGSHHCLQRCHFDKCGSCLEVLMKTCRCGLHSKELPCQKEFLCETKCKQIRDCSKHPCNRRCCDGSCPPCEKPCGRTLQCGTHKCPSACHRGPCYPCPRTVDIKCHCGGTVVTVPCGKQRKTRPPRCIKLCRNLPDCHHTKREAHRCHFGECPPCKQICNILLLNCNHHCGALCHASVLVKLDEHKPSMPWEARGPLVEKCALPCPPCPVPIPVTCHGQHETINVPCHEVRALSCGRSCGRKLDCGNHTCGLECHVVKGAEDDEKAGRNCQVCESKCTKPRPEGCSHNCPKPCHPGDCPPCRTVFRIRCYCGLNLPYISCGDWTDPDKQDKLKNCGNQCPKNYECGHRCRMTCHDGECLGAEECHKKVKVFCTCKRLKREFHCDVVRSGNGTIDCDEICAQKQEEIRKAVEFELEQKRKLEEEKNKKDVLEFEKKFQSKKKYRERRQYNEVEEQSLYKKYWFVMPFIVAISFEIEYKTFDVRKQEIAIKVQQRLSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01344591;
90% Identity
iTF_01344591;
80% Identity
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